View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10505_low_1 (Length: 415)
Name: NF10505_low_1
Description: NF10505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10505_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 33309454 - 33309851
Alignment:
| Q |
1 |
gaaaatacgattgagtaataagataagaacaaattgaagaacaaatacaggtagtgtttcttctaaggaattttcattccaaagcaatgaaccgtatgat |
100 |
Q |
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| T |
33309454 |
gaaaatacgattgagtaataagataagaacaaattgaagaacaaatacaggtagtgtttcttctaaggaattttcattccaaagcaatgaaccgtatgat |
33309553 |
T |
|
| Q |
101 |
aatgtcttattgaaacacacaagcgttgttttgtcggggtttttgataatggaatatgtaacgtttgaggaattcatcaatttttattcaatgatgattt |
200 |
Q |
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| T |
33309554 |
aatgtcttattgaaacacacaagcgttgttttgtcggggtttttaataatggaatatgtaacgtttgaggaattcatcaatttttattcaatgatgattt |
33309653 |
T |
|
| Q |
201 |
gcattagccaacacctttacaatctttgaaatcttctgcatgcaaataggattgatgagatattgcacaattgtgaagcaaaatttgaaatcaaatccat |
300 |
Q |
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| T |
33309654 |
gcattagccaacacttttacaatctttgaaa---tctgcatgcaaataggattgatgagatattgcacaattgtgaagcaaaatttgaaatcaaatccat |
33309750 |
T |
|
| Q |
301 |
gaagggggatagatttcttgtccccccttctttacaaagagaaatatcaaaatgggaagaaagggattttgtcaaaaagtgtagaacataagaaaatcca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33309751 |
gaagggggatagatttcttgtccccccttctttacaaagagaaatatcaaaatgggaagaaagggattttgtcaaaaagtgtagaacataagaaaagcca |
33309850 |
T |
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