View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10505_low_10 (Length: 315)

Name: NF10505_low_10
Description: NF10505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10505_low_10
NF10505_low_10
[»] chr4 (31 HSPs)
chr4 (194-282)||(39716717-39716805)
chr4 (194-282)||(3821198-3821286)
chr4 (199-282)||(52799029-52799112)
chr4 (194-265)||(29712368-29712440)
chr4 (193-265)||(35716315-35716387)
chr4 (194-265)||(51347487-51347558)
chr4 (194-265)||(53991568-53991639)
chr4 (193-262)||(24948306-24948375)
chr4 (192-265)||(39406248-39406321)
chr4 (194-282)||(50119957-50120045)
chr4 (197-282)||(13171627-13171712)
chr4 (195-248)||(47560252-47560305)
chr4 (194-282)||(3757725-3757813)
chr4 (217-269)||(5752473-5752525)
chr4 (194-282)||(12682755-12682843)
chr4 (210-282)||(30529278-30529350)
chr4 (182-282)||(36743201-36743301)
chr4 (194-265)||(20588561-20588632)
chr4 (211-282)||(24547347-24547418)
chr4 (195-282)||(35498532-35498619)
chr4 (199-282)||(15704115-15704198)
chr4 (194-265)||(43021891-43021962)
chr4 (217-282)||(46104201-46104266)
chr4 (217-265)||(8956938-8956986)
chr4 (217-265)||(8986910-8986958)
chr4 (217-265)||(37349808-37349856)
chr4 (211-265)||(17730449-17730503)
chr4 (192-265)||(578621-578694)
chr4 (194-282)||(2116088-2116176)
chr4 (217-265)||(9888906-9888954)
chr4 (217-265)||(35833430-35833478)
[»] scaffold0057 (1 HSPs)
scaffold0057 (191-282)||(20579-20670)
[»] chr5 (18 HSPs)
chr5 (195-282)||(25698717-25698804)
chr5 (118-195)||(37085689-37085766)
chr5 (194-282)||(41689274-41689362)
chr5 (195-282)||(3088031-3088118)
chr5 (194-282)||(30140501-30140589)
chr5 (195-282)||(33709813-33709900)
chr5 (194-265)||(12592485-12592556)
chr5 (194-265)||(36886985-36887056)
chr5 (194-282)||(34715602-34715683)
chr5 (195-254)||(26602196-26602255)
chr5 (211-282)||(30754425-30754496)
chr5 (192-282)||(17643385-17643475)
chr5 (217-265)||(6305466-6305514)
chr5 (217-265)||(43138563-43138611)
chr5 (53-87)||(37085628-37085662)
chr5 (217-265)||(754461-754509)
chr5 (218-265)||(12422361-12422408)
chr5 (198-265)||(42977849-42977913)
[»] chr1 (21 HSPs)
chr1 (194-282)||(1367290-1367378)
chr1 (193-282)||(17364603-17364692)
chr1 (193-282)||(33359698-33359787)
chr1 (194-282)||(4890097-4890185)
chr1 (194-282)||(29188300-29188388)
chr1 (195-265)||(33075673-33075743)
chr1 (194-265)||(22198924-22198995)
chr1 (192-265)||(29844898-29844971)
chr1 (194-282)||(16300388-16300476)
chr1 (193-282)||(47134702-47134791)
chr1 (193-282)||(52306067-52306156)
chr1 (194-265)||(1826792-1826863)
chr1 (197-282)||(46626324-46626409)
chr1 (188-264)||(19322362-19322438)
chr1 (195-261)||(42678374-42678440)
chr1 (202-265)||(10766193-10766256)
chr1 (194-265)||(38894754-38894825)
chr1 (217-282)||(5426238-5426303)
chr1 (194-270)||(10698130-10698206)
chr1 (217-265)||(28570747-28570795)
chr1 (197-265)||(43116050-43116118)
[»] chr2 (14 HSPs)
chr2 (196-282)||(9545775-9545861)
chr2 (197-282)||(2952759-2952844)
chr2 (194-282)||(10050189-10050277)
chr2 (195-282)||(4292782-4292869)
chr2 (192-282)||(28607218-28607308)
chr2 (192-265)||(17836964-17837037)
chr2 (194-265)||(32677200-32677271)
chr2 (192-265)||(9920926-9920999)
chr2 (192-282)||(24520863-24520953)
chr2 (211-282)||(19486205-19486276)
chr2 (193-282)||(10876571-10876658)
chr2 (199-269)||(18096495-18096565)
chr2 (211-282)||(42781027-42781098)
chr2 (201-282)||(19486111-19486192)
[»] chr6 (10 HSPs)
chr6 (194-282)||(1218517-1218605)
chr6 (194-282)||(24443926-24444014)
chr6 (192-282)||(15045546-15045636)
chr6 (197-265)||(4897511-4897579)
chr6 (194-282)||(18323834-18323922)
chr6 (194-282)||(4107953-4108041)
chr6 (194-269)||(6969308-6969383)
chr6 (194-282)||(9737752-9737840)
chr6 (205-268)||(9981273-9981336)
chr6 (193-282)||(28573828-28573917)
[»] chr8 (24 HSPs)
chr8 (195-282)||(18378802-18378889)
chr8 (194-282)||(36776403-36776491)
chr8 (193-282)||(24053912-24054001)
chr8 (193-268)||(41152666-41152743)
chr8 (216-265)||(41972977-41973026)
chr8 (211-282)||(25346050-25346121)
chr8 (211-265)||(40587709-40587763)
chr8 (194-282)||(4466420-4466508)
chr8 (217-265)||(8760723-8760771)
chr8 (217-265)||(25836282-25836330)
chr8 (218-265)||(44389022-44389069)
chr8 (217-282)||(7389220-7389285)
chr8 (217-265)||(1942811-1942859)
chr8 (217-265)||(8162792-8162840)
chr8 (193-265)||(19243233-19243305)
chr8 (193-265)||(19316417-19316489)
chr8 (218-282)||(25620714-25620778)
chr8 (211-282)||(9472168-9472238)
chr8 (218-265)||(40616111-40616158)
chr8 (211-282)||(41534248-41534319)
chr8 (211-282)||(42245732-42245803)
chr8 (218-265)||(45435013-45435060)
chr8 (217-282)||(25616497-25616563)
chr8 (217-265)||(32844171-32844219)
[»] chr7 (21 HSPs)
chr7 (195-282)||(39651148-39651235)
chr7 (197-282)||(17169026-17169111)
chr7 (194-282)||(48529933-48530021)
chr7 (195-265)||(29467751-29467821)
chr7 (194-282)||(21600970-21601058)
chr7 (194-282)||(39276612-39276700)
chr7 (195-282)||(11840447-11840534)
chr7 (194-265)||(3791478-3791549)
chr7 (195-282)||(21670792-21670879)
chr7 (195-265)||(44804520-44804590)
chr7 (200-265)||(29684130-29684195)
chr7 (194-282)||(49146122-49146211)
chr7 (194-269)||(9143472-9143550)
chr7 (194-282)||(27737741-27737829)
chr7 (194-269)||(688062-688137)
chr7 (211-265)||(35157012-35157066)
chr7 (217-282)||(31899985-31900050)
chr7 (194-282)||(4848347-4848436)
chr7 (211-282)||(34872185-34872256)
chr7 (217-265)||(24684650-24684698)
chr7 (195-240)||(7857050-7857095)
[»] scaffold0009 (2 HSPs)
scaffold0009 (193-269)||(225433-225509)
scaffold0009 (197-265)||(108549-108617)
[»] scaffold0069 (1 HSPs)
scaffold0069 (192-277)||(11770-11855)
[»] scaffold0385 (1 HSPs)
scaffold0385 (199-265)||(8317-8383)
[»] chr3 (19 HSPs)
chr3 (192-265)||(22473641-22473714)
chr3 (197-265)||(11955542-11955610)
chr3 (192-282)||(22519187-22519276)
chr3 (194-282)||(29530561-29530649)
chr3 (193-269)||(8393561-8393637)
chr3 (194-282)||(8528103-8528191)
chr3 (217-269)||(18682511-18682563)
chr3 (210-282)||(19368941-19369013)
chr3 (211-265)||(35855220-35855274)
chr3 (194-279)||(4139350-4139435)
chr3 (194-282)||(26777850-26777938)
chr3 (195-282)||(19895645-19895732)
chr3 (218-265)||(28981834-28981881)
chr3 (211-282)||(55297343-55297414)
chr3 (192-265)||(26102167-26102240)
chr3 (195-270)||(33872205-33872280)
chr3 (217-282)||(53800521-53800586)
chr3 (193-259)||(11602187-11602253)
chr3 (194-240)||(48523103-48523149)
[»] scaffold0051 (1 HSPs)
scaffold0051 (192-282)||(62059-62149)
[»] scaffold0759 (1 HSPs)
scaffold0759 (194-269)||(5904-5979)
[»] scaffold0381 (1 HSPs)
scaffold0381 (217-265)||(9591-9639)


Alignment Details
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 39716805 - 39716717
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  39716805 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggttgag 39716717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 3821286 - 3821198
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||   ||||||||||    
T  3821286 atctatatacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 3821198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 199 - 282
Target Start/End: Original strand, 52799029 - 52799112
Alignment:
Q  199 tatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  52799029 tatacttatattaaaagaaatgtcctttaaatttaccattttacccctattaggggcaatttggtaaattaattattggctgag 52799112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 194 - 265
Target Start/End: Original strand, 29712368 - 29712440
Alignment:
Q  194 atctatatacttatattaaaa-gaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  29712368 atctatatacttatattaaaaagaaatgtcccttaaatttaccattttgcccctataaggggcaatttggtaa 29712440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 35716387 - 35716315
Alignment:
Q  193 tatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    ||||||||||||||||||||||||||||| || || |||||||||||| ||||||| ||||||||||||||||    
T  35716387 tatctatatacttatattaaaagaaatgttccatggatttaccattttgcccctataaggggcaatttggtaa 35716315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 194 - 265
Target Start/End: Original strand, 51347487 - 51347558
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  51347487 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 51347558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 53991639 - 53991568
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||||||||||||||||||||||| || || |||||||||||| ||||||| ||||||||||||||||    
T  53991639 atctatatacttatattaaaagaaatgttccatggatttaccattttgcccctataaggggcaatttggtaa 53991568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 24948375 - 24948306
Alignment:
Q  193 tatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttgg 262  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||| | ||||| |||||||||||||    
T  24948375 tatctatatacttatataaaaagaaatgtcctttgaatttaccattttgctcctataaggggcaatttgg 24948306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 39406321 - 39406248
Alignment:
Q  192 atatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||  ||||||| ||||| ||||||||||    
T  39406321 atatctatatacttatataaaaagaaatgttccttgaatttaccatttagcccctataaggggtaatttggtaa 39406248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 50120045 - 50119957
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||| |||  ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||  ||  |||||||||||    
T  50120045 atctatatactaataagaaaaggaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 50119957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 282
Target Start/End: Original strand, 13171627 - 13171712
Alignment:
Q  197 tatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||| |||  |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||  ||  |||||||||||    
T  13171627 tatatactaataagaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 13171712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 47560305 - 47560252
Alignment:
Q  195 tctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctat 248  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  47560305 tctatatacttatattaaaagtaatgtcccttgaatttaccattttgcccctat 47560252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 3757725 - 3757813
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||| |||  ||||||||||| | |||||||||||||||| ||||||| ||||||||||||||||  ||  |||||||||||    
T  3757725 atctatatactaataagaaaagaaatgttcattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 3757813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 5752473 - 5752525
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaatta 269  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  5752473 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 5752525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 12682843 - 12682755
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||| |||| |||   ||||||| |||| ||||||||||| ||||||| |||||||||||||||||||| | ||||||||||    
T  12682843 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctatgaggggcaatttggtaaattataaattggttgag 12682755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 30529350 - 30529278
Alignment:
Q  210 taaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||  ||  |||||||||||    
T  30529350 taaaagaaatatcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 30529278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 282
Target Start/End: Complemental strand, 36743301 - 36743201
Alignment:
Q  182 atgaacattaatatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttga 281  Q
    |||||||| || ||||||||||| |||  |||||||||||||||| |||||||||||||  | |||| ||||||||||||||||  ||  ||||||||||    
T  36743301 atgaacataaacatctatatactaataagaaaagaaatgtcccttaaatttaccattttgtctctataaggggcaatttggtaatctacttattggttga 36743202  T
Q  282 g 282  Q
    |    
T  36743201 g 36743201  T

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Target: chr4; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 194 - 265
Target Start/End: Original strand, 20588561 - 20588632
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    ||||||||||| |||  ||||||||||||||||||||| |||||||| || |||| ||||||||||||||||    
T  20588561 atctatatactaataagaaaagaaatgtcccttgaattcaccattttgcctctataaggggcaatttggtaa 20588632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 24547347 - 24547418
Alignment:
Q  211 aaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||||||||||||  ||  |||||||||||    
T  24547347 aaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctatttattggttgag 24547418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 35498619 - 35498532
Alignment:
Q  195 tctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||| |||| |||||||||| |||||||||||| |||||| ||||||| | || |||||||||||||||   ||||||||||    
T  35498619 tctatatactaatataaaaagaaatggcccttgaatttatcattttgcccctataaaggacaatttggtaaattactaattggttgag 35498532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 282
Target Start/End: Original strand, 15704115 - 15704198
Alignment:
Q  199 tatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||| ||||| ||||| | || ||||||||||||| ||||||| ||||| ||||||||||||||   ||||||||||    
T  15704115 tatacttatataaaaagtaatgttctttaaatttaccattttgcccctataaggggaaatttggtaaattactaattggttgag 15704198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 265
Target Start/End: Original strand, 43021891 - 43021962
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    ||||||||||| |||  ||||||||||| ||||||||||||||| || || |||||||| ||||||||||||    
T  43021891 atctatatactaataagaaaagaaatgttccttgaatttaccatcttgcctctattaggtgcaatttggtaa 43021962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 46104201 - 46104266
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||| |||| ||||||||||| |||| || |||||||||||||||||||| | ||||||||||    
T  46104201 aatgtccattgattttaccattttgccccaatgaggggcaatttggtaaattacaaattggttgag 46104266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 8956938 - 8956986
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||||||||    
T  8956938 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 8956986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 8986910 - 8986958
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||||||||    
T  8986910 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 8986958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 37349808 - 37349856
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||||||||    
T  37349808 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 37349856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 17730449 - 17730503
Alignment:
Q  211 aaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    ||||||||||| | |||||||||||||||| | ||||| ||||||||||||||||    
T  17730449 aaaagaaatgtgctttgaatttaccattttgctcctataaggggcaatttggtaa 17730503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 578694 - 578621
Alignment:
Q  192 atatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||| ||||||  |||||||||||||||||| | |  |||||||||||| ||||||| |||| |||||||||||    
T  578694 atatatatatatatatattaaaagaaatgtctcattgatttaccattttgcccctataagggacaatttggtaa 578621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 2116088 - 2116176
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||| |||| |||   ||||||| |||| |||||||||||  || ||  |||||||||||||||||||| | ||||||||||    
T  2116088 atctatatactaatataaaagttaatgtccattgattttaccattttgtccttaggaggggcaatttggtaaattataaattggttgag 2116176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 9888954 - 9888906
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||| ||||||||||||||| ||||||| |||| |||||||||||    
T  9888954 aatgtcccatgaatttaccattttgcccctataagggtcaatttggtaa 9888906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 35833478 - 35833430
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    ||||||| |||| ||||||||||| ||||||| ||||||||||||||||    
T  35833478 aatgtccattgattttaccattttgcccctatgaggggcaatttggtaa 35833430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 191 - 282
Target Start/End: Complemental strand, 20670 - 20579
Alignment:
Q  191 aatatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  20670 aatatctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 20579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 25698804 - 25698717
Alignment:
Q  195 tctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  25698804 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggttgag 25698717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 118 - 195
Target Start/End: Original strand, 37085689 - 37085766
Alignment:
Q  118 ttagatacgggcagcaatatataatttctcaagtacaaattattttttattataatttctcaaaatgaacattaatat 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37085689 ttagatacgggcagcaatatataatttctcaagtacaaattattttttattataatttctcagaatgaacattaatat 37085766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 41689274 - 41689362
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| |||||| ||||    
T  41689274 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattatgggcaatttggtaaattaattattggctgag 41689362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 3088118 - 3088031
Alignment:
Q  195 tctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||   ||||||||||    
T  3088118 tctatatacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 3088031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 30140501 - 30140589
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| ||||||||||||||   ||||||||||    
T  30140501 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggtaatttggtaaattactaattggttgag 30140589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 33709900 - 33709813
Alignment:
Q  195 tctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| ||||||| | ||||||||||||||||||   ||||||||||    
T  33709900 tctatatacttatattaaaattaatgtcccttgaatttaccattttacccctataaagggcaatttggtaaattagtaattggttgag 33709813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 12592556 - 12592485
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||||||||||| |||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||||    
T  12592556 atctatatacttatataaaaagaaatgtcccatgaatttaccagtttacccctataaggggcaatttggtaa 12592485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 36887056 - 36886985
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  36887056 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 36886985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 34715602 - 34715683
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  34715602 atctatatacttatattaaaagaaatgtcc-------ttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 34715683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 26602255 - 26602196
Alignment:
Q  195 tctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattagggg 254  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||| ||| |||||    
T  26602255 tctatatacttatataaaaagaaatgtcccttgaatttaccattttacccttataagggg 26602196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 30754425 - 30754496
Alignment:
Q  211 aaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||  ||  |||||||||||    
T  30754425 aaaagaaatgtcctttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 30754496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 282
Target Start/End: Complemental strand, 17643475 - 17643385
Alignment:
Q  192 atatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||| |||  |||| |||||||||||||||||| |||||| ||| ||| ||||||||||||||||  ||  |||||||||||    
T  17643475 atatctatatactaataagaaaataaatgtcccttgaatttatcattttgcccttataaggggcaatttggtaatctatttattggttgag 17643385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 6305514 - 6305466
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||||||||    
T  6305514 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 6305466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 43138611 - 43138563
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||||||||    
T  43138611 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 43138563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 37085628 - 37085662
Alignment:
Q  53 ttgataactatagacccattcaaaaaattagtaga 87  Q
    |||||||||||||||||||||||||||||||||||    
T  37085628 ttgataactatagacccattcaaaaaattagtaga 37085662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 754509 - 754461
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||| ||||||||||||||| ||||||| |||| |||||||||||    
T  754509 aatgtcccatgaatttaccattttgcccctataagggtcaatttggtaa 754461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 265
Target Start/End: Complemental strand, 12422408 - 12422361
Alignment:
Q  218 atgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||| |||| ||||||||||| ||||||| ||||||||||||||||    
T  12422408 atgtcctttgattttaccattttgcccctataaggggcaatttggtaa 12422361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 265
Target Start/End: Complemental strand, 42977913 - 42977849
Alignment:
Q  198 atatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||||||| |||  |||||||| |||   |||||||||| ||||||| ||||||||||||||||    
T  42977913 atatacttatataaaagaaaatgtccattg---ttaccattttgcccctataaggggcaatttggtaa 42977849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 1367290 - 1367378
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  1367290 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 1367378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 193 - 282
Target Start/End: Complemental strand, 17364692 - 17364603
Alignment:
Q  193 tatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  17364692 tatctatatacttatattaaaagaaatatcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 17364603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 193 - 282
Target Start/End: Original strand, 33359698 - 33359787
Alignment:
Q  193 tatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| |||||| ||||    
T  33359698 tatctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaaattaattattggctgag 33359787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 4890097 - 4890185
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||| |||||| ||||    
T  4890097 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcctctattaggggcaatttggtaaattaattattggctgag 4890185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 29188388 - 29188300
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| |||||| ||||    
T  29188388 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaaattaattattggctgag 29188300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 195 - 265
Target Start/End: Complemental strand, 33075743 - 33075673
Alignment:
Q  195 tctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  33075743 tctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 33075673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 22198995 - 22198924
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||    
T  22198995 atctatatacttatattaaaagaaatgtcccttgaatttatcattttgcccctataaggggcaatttggtaa 22198924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 29844971 - 29844898
Alignment:
Q  192 atatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||| ||||||| ||||||||||||||||    
T  29844971 atatctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaa 29844898  T

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Target: chr1; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 16300388 - 16300476
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||||||||||||  |||||||||||||||||||||||| | ||||| ||||||||||||||||||||   ||||||||||    
T  16300388 atctatatacttatattaaaattaatgtcccttgaatttaccattttgctcctataaggggcaatttggtaaattactaattggttgag 16300476  T

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Target: chr1; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 193 - 282
Target Start/End: Original strand, 47134702 - 47134791
Alignment:
Q  193 tatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||||| ||| | ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||   ||||||||||    
T  47134702 tatctatatacttatataaaaggtaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 47134791  T

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Target: chr1; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 193 - 282
Target Start/End: Original strand, 52306067 - 52306156
Alignment:
Q  193 tatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||||| ||||||||| |||||| ||||||||||||| ||||||| |||||||||||| |||||||   ||||||||||    
T  52306067 tatctatatacttatataaaaagaaatatccctttaatttaccattttgcccctataaggggcaatttgataaattactaattggttgag 52306156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 194 - 265
Target Start/End: Original strand, 1826792 - 1826863
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||  | |||| ||||||||||||||||    
T  1826792 atctatatacttatattaaaagtaatgtcccttgaatttaccattttggctctataaggggcaatttggtaa 1826863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 282
Target Start/End: Complemental strand, 46626409 - 46626324
Alignment:
Q  197 tatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||| |||  |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||  ||  |||||||||||    
T  46626409 tatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 46626324  T

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Target: chr1; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 19322438 - 19322362
Alignment:
Q  188 attaatatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggta 264  Q
    |||| |||||||||||| |||  |||| ||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  19322438 attattatctatatactaataagaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggta 19322362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 195 - 261
Target Start/End: Original strand, 42678374 - 42678440
Alignment:
Q  195 tctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttg 261  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||  |||||| ||||||||||||    
T  42678374 tctatatacttatataaaaagaaatgtcccatgaatttaccattttatccctataaggggcaatttg 42678440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 265
Target Start/End: Original strand, 10766193 - 10766256
Alignment:
Q  202 acttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    ||||||||||||||||||||||  || |||||||||||| ||||||| |||| |||||||||||    
T  10766193 acttatattaaaagaaatgtcctatggatttaccattttgcccctataagggtcaatttggtaa 10766256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 265
Target Start/End: Original strand, 38894754 - 38894825
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    ||||||||||| |||  |||  |||||||| |||||||||||||||| ||||||| ||||||||||||||||    
T  38894754 atctatatactaataagaaagtaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaa 38894825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 5426238 - 5426303
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||| |||| ||||||||||| ||| ||  |||||||||||||||||||| | ||||||||||    
T  5426238 aatgtccattgattttaccattttgcccttagaaggggcaatttggtaaattacaaattggttgag 5426303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 10698206 - 10698130
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaa 270  Q
    |||||||| || | || |||||||||||||  | ||||||||||||| ||||||  ||||||| |||||||||||||    
T  10698206 atctatatgctaacataaaaagaaatgtccaataaatttaccattttgcccctagaaggggcattttggtaaattaa 10698130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 28570747 - 28570795
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||| ||||||||||||||| ||||||| |||| |||||||||||    
T  28570747 aatgtcccatgaatttaccattttgcccctataagggtcaatttggtaa 28570795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 43116050 - 43116118
Alignment:
Q  197 tatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||| |||| |||| | |||||| |||||||| | ||||| ||||||  ||||||||||||||||    
T  43116050 tatatactaatataaaaatacatgtccattgaatttccaattttgcccctaggaggggcaatttggtaa 43116118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 196 - 282
Target Start/End: Complemental strand, 9545861 - 9545775
Alignment:
Q  196 ctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  9545861 ctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 9545775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 197 - 282
Target Start/End: Original strand, 2952759 - 2952844
Alignment:
Q  197 tatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  2952759 tatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 2952844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 10050277 - 10050189
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||   ||||||||||    
T  10050277 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttgataaattactaattggttgag 10050189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 4292869 - 4292782
Alignment:
Q  195 tctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| | ||||||| ||||||||||||||||||| |||||| ||||    
T  4292869 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgctcctattaagggcaatttggtaaattaattattggctgag 4292782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 192 - 282
Target Start/End: Original strand, 28607218 - 28607308
Alignment:
Q  192 atatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||  |||||| |||||||||||||||||||| | ||||||||||    
T  28607218 atatctatatacttatattaaaataaatgtccattgaatttaccattttgtccctataaggggcaatttggtaaattacaaattggttgag 28607308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 192 - 265
Target Start/End: Original strand, 17836964 - 17837037
Alignment:
Q  192 atatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  17836964 atatatatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 17837037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 32677271 - 32677200
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  32677271 atctatatacttatattaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 32677200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 9920999 - 9920926
Alignment:
Q  192 atatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||| |||||||||||||||||||||||||||| || |||||||||||| ||||||| ||||||||||||||||    
T  9920999 atatatatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaa 9920926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 282
Target Start/End: Original strand, 24520863 - 24520953
Alignment:
Q  192 atatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||||||||| |||||||||||||||||||||||  ||||| || |||| ||| ||||||||||||||||   ||||||||||    
T  24520863 atatctatatacttatataaaaagaaatgtcccttgaatttataattttgcctctataaggagcaatttggtaaattactaattggttgag 24520953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 19486205 - 19486276
Alignment:
Q  211 aaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||  ||  |||||||||||    
T  19486205 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 19486276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 193 - 282
Target Start/End: Complemental strand, 10876658 - 10876571
Alignment:
Q  193 tatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||| |||  |||||||||||||||||||||||||||||| ||||||  ||||||||||||||||  ||  |||||||||||    
T  10876658 tatctatatactaataagaaaagaaatgtcccttgaatttaccattttgccccta--aggggcaatttggtaatctacttattggttgag 10876571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 18096495 - 18096565
Alignment:
Q  199 tatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaatta 269  Q
    ||||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||| ||||||| ||||||    
T  18096495 tatacttatataaaaagaaatgtcctttgaatttaccattttgcccctataaggggtaatttggcaaatta 18096565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 42781027 - 42781098
Alignment:
Q  211 aaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||||||||||| ||||||  |||| | ||||||||||||||||  ||  |||||||||||    
T  42781027 aaaagaaatgtcccttgaatttatcattttgtccctgtaaggggcaatttggtaatctatttattggttgag 42781098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 282
Target Start/End: Complemental strand, 19486192 - 19486111
Alignment:
Q  201 tacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||| |||  |||| ||| ||||||||| |||||| ||||||| ||||||||||||||||  ||  |||||||||||    
T  19486192 tacttatataaaagaaaatatccattgaatttatcattttgcccctataaggggcaatttggtaatctacttattggttgag 19486111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 1218517 - 1218605
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| |||||| ||||    
T  1218517 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaaattaattattggctgag 1218605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 24443926 - 24444014
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  24443926 atctatatacttatattaaaagaaatatcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 24444014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 192 - 282
Target Start/End: Complemental strand, 15045636 - 15045546
Alignment:
Q  192 atatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| |||||||||||||| | ||| ||||||    
T  15045636 atatctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaagggtaatttggtaaattacaaatttgttgag 15045546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 4897579 - 4897511
Alignment:
Q  197 tatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  4897579 tatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 4897511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 18323834 - 18323922
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||   ||||||||||||||||| |||||| ||||    
T  18323834 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaaaagcaatttggtaaattaattattggctgag 18323922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 4107953 - 4108041
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||| |||| |||   ||||||| |||| ||||||||||||||||||| |||||||||||||||||||| | ||||||||||    
T  4107953 atctatatactaatataaaagttaatgtccattgattttaccatttttcccctatgaggggcaatttggtaaattacaaattggttgag 4108041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 269
Target Start/End: Complemental strand, 6969383 - 6969308
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaatta 269  Q
    ||||||||||| |||| |||   |||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  6969383 atctatatactaatataaaagttaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 6969308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 9737840 - 9737752
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||||  |||||| |||||||||||| |||  ||  |||||||||||    
T  9737840 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttgataatctatttattggttgag 9737752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 268
Target Start/End: Complemental strand, 9981336 - 9981273
Alignment:
Q  205 tatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaatt 268  Q
    ||||| ||| ||||||| | |||||||||||||||| ||||||| |||||||||||||||||||    
T  9981336 tatataaaaggaaatgttcattgaatttaccattttacccctataaggggcaatttggtaaatt 9981273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 282
Target Start/End: Complemental strand, 28573917 - 28573828
Alignment:
Q  193 tatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||| |||| |||   ||| ||| |||| ||||||||||| ||||||  |||||||||||||||||||| | ||||||||||    
T  28573917 tatctatatactgatataaaagttaatatcctttgattttaccattttgcccctaggaggggcaatttggtaaattacaaattggttgag 28573828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 18378889 - 18378802
Alignment:
Q  195 tctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||| || |||||||||||||||||||||||||| |||||||||||    
T  18378889 tctatatacttatattaaaagaaatgtcctttgaatttatcattttgcctctattaggggcaatttggtaaattaattattggttgag 18378802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 36776403 - 36776491
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||  ||  |||||||||||    
T  36776403 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 36776491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 282
Target Start/End: Original strand, 24053912 - 24054001
Alignment:
Q  193 tatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||| |||  |||||||||||||||||||||||||||||| | ||||| ||||||||||||||||  ||  |||||||||||    
T  24053912 tatctatatactaataagaaaagaaatgtcccttgaatttaccattttgctcctataaggggcaatttggtaatctacttattggttgag 24054001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 41152666 - 41152743
Alignment:
Q  193 tatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggc--aatttggtaaatt 268  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||  |||||| |||| |  |||||||||||||    
T  41152666 tatctatatacttatataaaaagaaatgtcccttgaatttaccattttgtccctatcagggtcctaatttggtaaatt 41152743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 41972977 - 41973026
Alignment:
Q  216 aaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  41972977 aaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 41973026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 25346050 - 25346121
Alignment:
Q  211 aaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||| |||||||||||||||| || |||| ||||||||||||||||  ||  |||||||||||    
T  25346050 aaaagaaatgtccattgaatttaccattttgcctctataaggggcaatttggtaatctacttattggttgag 25346121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 265
Target Start/End: Complemental strand, 40587763 - 40587709
Alignment:
Q  211 aaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||| |||||||| |||||||||||||||| ||||||| ||||||||||||||||    
T  40587763 aaaataaatgtccattgaatttaccattttgcccctataaggggcaatttggtaa 40587709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 4466508 - 4466420
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||| |||| |||   ||||||| |||| ||||||||||| ||| ||  |||||||||||||||||||| | ||||||||||    
T  4466508 atctatatactaatataaaagttaatgtccattgattttaccattttacccttaggaggggcaatttggtaaattacaaattggttgag 4466420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 8760723 - 8760771
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||||||||    
T  8760723 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 8760771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 25836330 - 25836282
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||||||||    
T  25836330 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 25836282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 265
Target Start/End: Complemental strand, 44389069 - 44389022
Alignment:
Q  218 atgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  44389069 atgtcccttgaatttaccatttttcccttataaggggtaatttggtaa 44389022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 7389220 - 7389285
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||| |||| ||||||||||| |||| |  |||||||||||||||||||| | ||||||||||    
T  7389220 aatgtccattgattttaccattttgccccaaggaggggcaatttggtaaattacaaattggttgag 7389285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 1942811 - 1942859
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||| ||||||||||||||| || |||| ||||||||||||||||    
T  1942811 aatgtcccatgaatttaccattttgcctctataaggggcaatttggtaa 1942859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 8162840 - 8162792
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||| ||||||||||||||| ||||||| |||| |||||||||||    
T  8162840 aatgtcccatgaatttaccattttgcccctataagggtcaatttggtaa 8162792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 19243233 - 19243305
Alignment:
Q  193 tatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||||||| |||| |||||  |||||  |||| |||||| |||| ||||| ||||||||||||||||||    
T  19243233 tatctatatactaatataaaaagtgatgtctgttgattttacctttttgcccctcttaggggcaatttggtaa 19243305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 19316417 - 19316489
Alignment:
Q  193 tatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||||||| |||| |||||  |||||  |||| |||||| |||| ||||| ||||||||||||||||||    
T  19316417 tatctatatactaatataaaaagtgatgtctgttgattttacctttttgcccctcttaggggcaatttggtaa 19316489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 282
Target Start/End: Complemental strand, 25620778 - 25620714
Alignment:
Q  218 atgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||| |||| ||||| ||||| ||||||| |||||||||||||||||||| | ||| ||||||    
T  25620778 atgtccattgattttactattttgcccctatgaggggcaatttggtaaattacaaattagttgag 25620714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 9472168 - 9472238
Alignment:
Q  211 aaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||||||| |||||||||| || ||| || ||||||||||||||  ||  |||||||||||    
T  9472168 aaaagaaatgtcccttgaaattaccattttgcctcta-taagggcaatttggtaatctacttattggttgag 9472238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 265
Target Start/End: Complemental strand, 40616158 - 40616111
Alignment:
Q  218 atgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    ||||||||||||||||||||||| | ||||| || |||||||||||||    
T  40616158 atgtcccttgaatttaccattttgctcctataagaggcaatttggtaa 40616111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 41534319 - 41534248
Alignment:
Q  211 aaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||| ||||||||| ||||||||||||||| | ||||| |||| ||||||| |||||||   ||||||||||    
T  41534319 aaaataaatgtcccatgaatttaccattttgctcctataagggacaatttgataaattattaattggttgag 41534248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 42245803 - 42245732
Alignment:
Q  211 aaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||| |||||||| |||||||| ||||||| ||||| |||||| |||  ||  |||||||||||    
T  42245803 aaaagaaatgtcacttgaattcaccattttgcccctataaggggtaatttgataatctacttattggttgag 42245732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 265
Target Start/End: Original strand, 45435013 - 45435060
Alignment:
Q  218 atgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    ||||| ||||||||||||||||| ||| ||| ||||||||||||||||    
T  45435013 atgtcacttgaatttaccattttgcccttataaggggcaatttggtaa 45435060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 25616563 - 25616497
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaatta-aatattggttgag 282  Q
    ||||||| |||| ||||||||||| ||| ||  |||||||||||||||||||| || ||||||||||    
T  25616563 aatgtccattgattttaccattttgcccttaagaggggcaatttggtaaattacaaaattggttgag 25616497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 32844171 - 32844219
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||| | ||||||||||||| |||| || ||||||||||||||||    
T  32844171 aatgtcccataaatttaccattttgccccgataaggggcaatttggtaa 32844219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 39651235 - 39651148
Alignment:
Q  195 tctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||   ||||||||||    
T  39651235 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattactaattggttgag 39651148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 197 - 282
Target Start/End: Original strand, 17169026 - 17169111
Alignment:
Q  197 tatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| |||||| ||||    
T  17169026 tatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaaattaattattggctgag 17169111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 48530021 - 48529933
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||| |||||||| |||||||||||||||||||| |||||| ||||    
T  48530021 atctatatacttatattaaaagaaatgtcctttgaaattaccattttgcccctattgggggcaatttggtaaattaattattggctgag 48529933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 29467751 - 29467821
Alignment:
Q  195 tctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  29467751 tctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 29467821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 21601058 - 21600970
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||   ||||||||||    
T  21601058 atctatatacttctattaaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 21600970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 39276612 - 39276700
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| |||||||||||||| | ||| ||||||    
T  39276612 atctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaagggtaatttggtaaattacaaatttgttgag 39276700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 11840534 - 11840447
Alignment:
Q  195 tctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||   ||||||||||    
T  11840534 tctatatacttctattaaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 11840447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 194 - 265
Target Start/End: Original strand, 3791478 - 3791549
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    ||||||||||||||||||||||||||||||  || |||||||||||| ||||||| ||||||||||||||||    
T  3791478 atctatatacttatattaaaagaaatgtcctatggatttaccattttgcccctataaggggcaatttggtaa 3791549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 21670879 - 21670792
Alignment:
Q  195 tctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||| | ||  |||||||||||||| | ||| ||||||    
T  21670879 tctatatacttatattaaaagaaatgtcccttgaatttactattttgcccctataaaggataatttggtaaattacaaatttgttgag 21670792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 44804520 - 44804590
Alignment:
Q  195 tctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||||| |||  ||||||||||||||||||||||||||||||  |||||| ||||||||||||||||    
T  44804520 tctatatactaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaa 44804590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 29684195 - 29684130
Alignment:
Q  200 atacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    ||||| |||| ||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||    
T  29684195 atactaatataaaaagaaatgtgccttgaatttaccattttacccctataaggggcaatttggtaa 29684130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 49146211 - 49146122
Alignment:
Q  194 atctatatacttatattaaaaga-aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||| |||| |||||  ||||||| |||| ||||||||||| ||||||| |||||||||||||||||||| | ||||||||||    
T  49146211 atctatatactaatataaaaagttaatgtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 49146122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 269
Target Start/End: Original strand, 9143472 - 9143550
Alignment:
Q  194 atctatatacttatattaaaagaaatg---tcccttgaatttaccatttttcccctattaggggcaatttggtaaatta 269  Q
    ||||||||||| |||| |||||||||    |||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  9143472 atctatatactaatataaaaagaaataatatcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 9143550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 27737829 - 27737741
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||| ||| |||||||| ||||||||||||||||||||| ||||||| | ||  ||||||||||||||   ||||||||||    
T  27737829 atctatatacttctataaaaagaaaagtcccttgaatttaccattttacccctataaaggataatttggtaaattactaattggttgag 27737741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 194 - 269
Target Start/End: Original strand, 688062 - 688137
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaatta 269  Q
    ||||||||||| |||| |||   ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||    
T  688062 atctatatactaatataaaagttaatgtcctttgaatttaccattttgcccctataaggggcaatttggtaaatta 688137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 265
Target Start/End: Complemental strand, 35157066 - 35157012
Alignment:
Q  211 aaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||    
T  35157066 aaaagaaatgtcacttgaatttaccattttgcccctataaggggcaatttggtaa 35157012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 31900050 - 31899985
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||||||| ||||| |||||| ||||    
T  31900050 aatgtcctttgaatttacaattttgcccctattaggggcaatttggtagattaattattggctgag 31899985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 4848347 - 4848436
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaatta-aatattggttgag 282  Q
    ||||||||||| |||| |||   ||||||| |||| ||||||||||| ||||||| ||||| |||||||||||||| || ||||||||||    
T  4848347 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctatgaggggtaatttggtaaattacaaaattggttgag 4848436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 34872185 - 34872256
Alignment:
Q  211 aaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||| ||||| ||||||||||  |||||| ||||||||||||||||  ||  |||||||||||    
T  34872185 aaaagaaatgtcctttgaacttaccattttgtccctataaggggcaatttggtaatctacttattggttgag 34872256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 24684698 - 24684650
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||| ||||||||||||||| || |||| ||||||||||||||||    
T  24684698 aatgtcccatgaatttaccattttgcctctataaggggcaatttggtaa 24684650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 7857095 - 7857050
Alignment:
Q  195 tctatatacttatattaaaagaaatgtcccttgaatttaccatttt 240  Q
    |||||||||| |||  ||||||||||||||||||||||||| ||||    
T  7857095 tctatatactaataagaaaagaaatgtcccttgaatttaccgtttt 7857050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 225433 - 225509
Alignment:
Q  193 tatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaatta 269  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||    
T  225433 tatctatatacttatattaaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaatta 225509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 108549 - 108617
Alignment:
Q  197 tatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||| |||  ||||||||||||||||||||||||||||||  ||| || ||||| ||||||||||    
T  108549 tatatactaataagaaaagaaatgtcccttgaatttaccattttgtccccataaggggtaatttggtaa 108617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 192 - 277
Target Start/End: Original strand, 11770 - 11855
Alignment:
Q  192 atatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattgg 277  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||| ||  ||||||||||||||||||||||| | ||||||    
T  11770 atatctatatacttatattaaaagaaatgtcatttgaatttaccattttgcctttattaggggcaatttggtaaatttattattgg 11855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 199 - 265
Target Start/End: Complemental strand, 8383 - 8317
Alignment:
Q  199 tatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||    
T  8383 tatacttatattaaaagaaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 8317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 192 - 265
Target Start/End: Original strand, 22473641 - 22473714
Alignment:
Q  192 atatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||||||||||||||||||||||||| || || |||||||||||| ||||||| ||||||||||||||||    
T  22473641 atatctatatacttatattaaaagaaatgttccatggatttaccattttgcccctataaggggcaatttggtaa 22473714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 11955610 - 11955542
Alignment:
Q  197 tatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||||||||||||||||||||||| || |||||||||||| ||||||| ||||||||||||||||    
T  11955610 tatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaa 11955542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 282
Target Start/End: Original strand, 22519187 - 22519276
Alignment:
Q  192 atatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||||||| ||||||| ||||||||||| ||||||||   ||||||||||    
T  22519187 atatctatatacttctattaaaagaa-tgtccattgaatttaccattttgcccctataaggggcaatttagtaaattattaattggttgag 22519276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 29530649 - 29530561
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||||  |||||| ||||||||||||||||  ||  |||||||||||    
T  29530649 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctacttattggttgag 29530561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 8393561 - 8393637
Alignment:
Q  193 tatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaatta 269  Q
    |||||||||||| |||| |||   ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||    
T  8393561 tatctatatactaatataaaagttaatgtcctttgaatttaccattttgcccctataaggggcaatttggtaaatta 8393637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 8528191 - 8528103
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||| |||  |||||||||||||||||||||||||||| |  |||||| ||||||||||||||||  ||  |||||||||||    
T  8528191 atctatatactaataagaaaagaaatgtcccttgaatttaccattctgtccctataaggggcaatttggtaatatatttattggttgag 8528103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 18682511 - 18682563
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaatta 269  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  18682511 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 18682563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 19369013 - 19368941
Alignment:
Q  210 taaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||  ||  |||||||||||    
T  19369013 taaaagaaatgtcccttgattttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 19368941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 35855220 - 35855274
Alignment:
Q  211 aaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  35855220 aaaagaaatgtcccttaaatttaccattttgcccctataaggggcaatttggtaa 35855274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 279
Target Start/End: Complemental strand, 4139435 - 4139350
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggtt 279  Q
    ||||||||||| |||| |||   ||||||| |||| |||||||||||  ||||||||||||||||||||||||||| | |||||||    
T  4139435 atctatatactaatataaaagttaatgtccattgattttaccattttgtccctattaggggcaatttggtaaattacaaattggtt 4139350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 26777938 - 26777850
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||| |||| |||   || |||| |||| ||||||||||| ||||||| |||||||||||||||||||| | ||||||||||    
T  26777938 atctatatactaatataaaagttaacgtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 26777850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 19895732 - 19895645
Alignment:
Q  195 tctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    |||||||||||||||  ||  |||||||| |||||||||||||||| ||| ||| | ||||||||||||||||||   ||||||||||    
T  19895732 tctatatacttatatagaagaaaatgtccattgaatttaccattttgcccttataaagggcaatttggtaaattagtaattggttgag 19895645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 265
Target Start/End: Complemental strand, 28981881 - 28981834
Alignment:
Q  218 atgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  28981881 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 28981834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 55297414 - 55297343
Alignment:
Q  211 aaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||||| |||||||||||||| ||||||| | ||| ||||||||||||||   ||||||||||    
T  55297414 aaaagaaatgtccctcgaatttaccattttacccctataaagggtaatttggtaaattattaattggttgag 55297343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 26102240 - 26102167
Alignment:
Q  192 atatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||| |||||||| |||  ||||||||||||| |||||||||||||||| ||||||| || || ||||||||||    
T  26102240 atatatatatactaataagaaaagaaatgtcctttgaatttaccattttgcccctataagaggtaatttggtaa 26102167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 33872205 - 33872280
Alignment:
Q  195 tctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaa 270  Q
    |||||||||| |||| |||||||||||||  |||||||||||||||  |||||  |||| || |||||||||||||    
T  33872205 tctatatactaatataaaaagaaatgtccgatgaatttaccattttgtccctagaagggccattttggtaaattaa 33872280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 53800521 - 53800586
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||| |||| ||||||||||| ||| ||  |||||||||||||||||||| | ||||||||||    
T  53800521 aatgtccattgattttaccattttgcccttaggaggggcaatttggtaaattacaaattggttgag 53800586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 11602253 - 11602187
Alignment:
Q  193 tatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatt 259  Q
    |||||||||||| |||| ||||   |||||| |||| ||||||||||| ||||||| ||||||||||    
T  11602253 tatctatatactaatataaaaatccatgtccgttgattttaccattttgcccctataaggggcaatt 11602187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 48523149 - 48523103
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttt 240  Q
    ||||||||||| |||| ||||||||||| ||| ||||||||||||||    
T  48523149 atctatatactaatataaaaagaaatgttcctagaatttaccatttt 48523103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 192 - 282
Target Start/End: Original strand, 62059 - 62149
Alignment:
Q  192 atatctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaattaaatattggttgag 282  Q
    ||||||||||||| |||| |||   ||||||| |||| ||||||||||| ||||||| |||||||||||||||||||| | ||||||||||    
T  62059 atatctatatactaatataaaagttaatgtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 62149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 194 - 269
Target Start/End: Complemental strand, 5979 - 5904
Alignment:
Q  194 atctatatacttatattaaaagaaatgtcccttgaatttaccatttttcccctattaggggcaatttggtaaatta 269  Q
    ||||||||||| |||| |||   |||||||| ||||||||||||||| ||||||| ||||||||||||||||||||    
T  5979 atctatatactaatataaaagttaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaaatta 5904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 9591 - 9639
Alignment:
Q  217 aatgtcccttgaatttaccatttttcccctattaggggcaatttggtaa 265  Q
    |||||||| ||||||||||||||| ||||||| |||| |||||||||||    
T  9591 aatgtcccatgaatttaccattttgcccctataagggtcaatttggtaa 9639  T

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