View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10505_low_11 (Length: 310)
Name: NF10505_low_11
Description: NF10505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10505_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 29775095 - 29774819
Alignment:
| Q |
17 |
agcaatttctctatcaagaagttgggagatttgctcgaggttgctcgtgttccacctgctgtcaatcaagtggaatgccatccttcctggaggcaggaca |
116 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29775095 |
agcaatttctctatcaagaagttgggagatttgcttgaggttgctcgtgttccacctgctgtcaatcaagtggaatgccatccttcctggaggcaggaca |
29774996 |
T |
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| Q |
117 |
aactccgcgatttctgcaaatccaaaggtgttcacttctctgtaagtttccgactcttgaatgatcattattttgtttccgcacattacgtttactatat |
216 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
29774995 |
aactccgcgatttctgcaattccaaaggtgttcacttctctgtaagtttccgactcttaaatgatcattattttgtttccgcacattacgtttac--tat |
29774898 |
T |
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| Q |
217 |
gttcatgaaaccttttcgttttcttcaaataagtcattatatttttgcatgattttctgtaatgtttagggttattcacctttg |
300 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29774897 |
gttcatgaaaccttttcgctttct-----taagtcattatatttttgcatgattttctgtaatgtttagggttattcacctttg |
29774819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 29785389 - 29785201
Alignment:
| Q |
17 |
agcaatttctctatcaagaagttgggagatttgctcgaggttgctcgtgttccacctgctgtcaatcaagtggaatgccatccttcctggaggcaggaca |
116 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29785389 |
agcaatttctcttccaagaagttgggggatttgctcgaggttgcccgtgttcctcctgctgtcaatcaagtagaatgccatccttcctggaggcaggaca |
29785290 |
T |
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| Q |
117 |
aactccgcgatttctgcaaatccaaaggtgttcacttctctgtaagtttccgactcttgaatgatcattattttgtttccgcacattac |
205 |
Q |
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| || || |||||||| || ||||||||||| ||| ||||||||||||| | | ||||||||| ||||||||||||||| ||||||||| |
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| T |
29785289 |
agctgcgtgatttctgtaattccaaaggtgtccacctctctgtaagttttcaagtcttgaatgctcattattttgtttctgcacattac |
29785201 |
T |
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