View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10505_low_13 (Length: 284)
Name: NF10505_low_13
Description: NF10505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10505_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 39815368 - 39815621
Alignment:
| Q |
18 |
caagggtttatgggtgcttgatgtgaaaactaataattttgcatttgctaaaaatggagcaagagaatagagatagagaagatgagacattatttatatt |
117 |
Q |
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| T |
39815368 |
caagggtttatgggtgcttgatgtgaaaactaataattttgcatttgctaaaaatggagcaagagaatagagatagagaagatgagacattatttatatt |
39815467 |
T |
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| Q |
118 |
attcttttctcatagaatttctattacaatgtgagtcttatatatttataggaaaatacaaatgaactgaatgatagatgcttcaacttttaagagttgt |
217 |
Q |
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| T |
39815468 |
attcttttctcatagaatttctattacaatgtgagtcttatatatttataggaaaatacaaatgaactgaatgatagatgcttcaacttttaagagttgc |
39815567 |
T |
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| Q |
218 |
tgaatctagaggttcacattatgtgctcattttgatctacaatgcaagttgtct |
271 |
Q |
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| T |
39815568 |
tgaatctagaggttcacattatgtgctcattttgatctacaatgcatgttgtct |
39815621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 86 - 253
Target Start/End: Original strand, 39922641 - 39922803
Alignment:
| Q |
86 |
agagatagagaagatgagacattatttatattattcttttctcatagaatttctattacaatgtgagtcttatatatttataggaaaatacaaatgaact |
185 |
Q |
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| T |
39922641 |
agagatagagaagatgagagagtatttataatattctcttctcatagaatttctattacaatgtgagtct----tatttataggaaaatacaaatgaaat |
39922736 |
T |
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| Q |
186 |
gaatgatagatgcttcaacttttaagagttgttgaatctagaggttcacattatgtgctcattttgat |
253 |
Q |
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| T |
39922737 |
gtatgatagatccttcaac-tttaagagttcttgtatctagaggctcatattatgagttcattctgat |
39922803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 73 - 253
Target Start/End: Original strand, 39911530 - 39911705
Alignment:
| Q |
73 |
ggagcaagagaatagagatagagaagatgagacattatttatattattcttttctcatagaatttctattacaatgtgagtcttatatatttataggaaa |
172 |
Q |
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| T |
39911530 |
ggagcaagagaatagaaatatagaagatgagagagtatttatattattctcctctcataaaatttctattataatgggagtct----tatttataggaga |
39911625 |
T |
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| Q |
173 |
atacaaatgaactgaatgatagatgcttcaacttttaagagttgttgaatctagaggttcacattatgtgctcattttgat |
253 |
Q |
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| T |
39911626 |
atacaaatgaaatgtatgatagatgcttcaac-tgtaagagttgttgaatctagaggctatcattatgtgttgattttgat |
39911705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 131 - 253
Target Start/End: Original strand, 39806159 - 39806277
Alignment:
| Q |
131 |
agaatttctattacaatgtgagtcttatatatttataggaaaatacaaatgaactgaatgatagatgcttcaacttttaagagttgttgaatctagaggt |
230 |
Q |
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| T |
39806159 |
agaatttctattacaatgtgatttttat----tgataggaaaatataaatgaactgaatgatagatgcttcaacttttaagagttgttgaatctagaggc |
39806254 |
T |
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| Q |
231 |
tcacattatgtgctcattttgat |
253 |
Q |
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| T |
39806255 |
tcatattatgtgttcattttgat |
39806277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 39806083 - 39806162
Alignment:
| Q |
18 |
caagggtttatgggtgcttgatgtgaaaactaataattttgcatttgctaaaaatggagcaagagaatagagatagagaa |
97 |
Q |
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| T |
39806083 |
caagggttgatgggtgcttgatgtgaaaactattagttttgcttttgctaaaaatggagcaagagaatagagatagagaa |
39806162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 39903084 - 39903176
Alignment:
| Q |
160 |
tatttataggaaaatacaaatgaactgaatgatagatgcttcaacttttaagagttgttgaatctagaggttcacattatgtgctcattttgat |
253 |
Q |
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| T |
39903084 |
tatttattggaatttacaaatgaactgtatgatagatgcttcaactgt-aagagttgttgaatcaagaggctcacattatgtgttcattttgat |
39903176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 39922594 - 39922641
Alignment:
| Q |
21 |
gggtttatgggtgcttgatgtgaaaactaataattttgcatttgctaa |
68 |
Q |
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| T |
39922594 |
gggttgatgggtgcttgatgtgaaaaccaataattttgcatttgctaa |
39922641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 39902999 - 39903047
Alignment:
| Q |
27 |
atgggtgcttgatgtgaaaactaataattttgcatttgctaaaaatgga |
75 |
Q |
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| T |
39902999 |
atgggtgcttgatgtgaaaactaataatttttcatttcttaaaaatgga |
39903047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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