View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10505_low_16 (Length: 255)

Name: NF10505_low_16
Description: NF10505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10505_low_16
NF10505_low_16
[»] chr1 (4 HSPs)
chr1 (1-255)||(29442587-29442841)
chr1 (1-203)||(29452579-29452781)
chr1 (1-203)||(29467053-29467255)
chr1 (1-192)||(29423944-29424135)
[»] chr2 (17 HSPs)
chr2 (1-202)||(14551040-14551240)
chr2 (26-179)||(8572754-8572910)
chr2 (8-151)||(10372653-10372796)
chr2 (30-151)||(9292699-9292820)
chr2 (26-174)||(9316770-9316921)
chr2 (8-112)||(10336621-10336725)
chr2 (8-103)||(9329418-9329513)
chr2 (16-95)||(17565357-17565436)
chr2 (30-153)||(10353914-10354037)
chr2 (15-102)||(12011835-12011922)
chr2 (26-111)||(9283427-9283512)
chr2 (8-96)||(10348629-10348717)
chr2 (8-102)||(7612716-7612810)
chr2 (29-93)||(7114901-7114965)
chr2 (8-83)||(9060333-9060408)
chr2 (8-102)||(8578760-8578854)
chr2 (7-112)||(9275333-9275438)
[»] chr8 (1 HSPs)
chr8 (26-202)||(41965975-41966154)
[»] scaffold0667 (1 HSPs)
scaffold0667 (8-193)||(5185-5373)
[»] chr4 (1 HSPs)
chr4 (26-151)||(26575650-26575775)
[»] chr3 (1 HSPs)
chr3 (26-151)||(37463293-37463418)
[»] chr5 (1 HSPs)
chr5 (17-97)||(36225575-36225655)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 29442587 - 29442841
Alignment:
Q  1 ctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29442587 ctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaa 29442686  T
Q  101 aatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgatgatttctctaacctaaccaccggcgttaaactcaacattcctt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29442687 aatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgaagatttctctaacctaaccaccggcgttaaactcaacattcctt 29442786  T
Q  201 tcacaggtcctatctaccgcatgtctcttctaggttcatgtaacggccttctctg 255  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  29442787 tcacaggtcccatcaaccgcatgtctcttctaggttcatgtaacggccttctctg 29442841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 29452579 - 29452781
Alignment:
Q  1 ctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaa 100  Q
    |||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  29452579 ctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaa 29452678  T
Q  101 aatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgatgatttctctaacctaaccaccggcgttaaactcaacattcctt 200  Q
    |||| |||||||||||||||||||||||||||||||| || ||||||||||||| | ||||||||||||||||||||| || ||||||||||  ||||||    
T  29452679 aattccctcaatcgttccttaatccttcgacacaactctgttttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctt 29452778  T
Q  201 tca 203  Q
    |||    
T  29452779 tca 29452781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 29467053 - 29467255
Alignment:
Q  1 ctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaa 100  Q
    |||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  29467053 ctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctccga 29467152  T
Q  101 aatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgatgatttctctaacctaaccaccggcgttaaactcaacattcctt 200  Q
    |||| ||||||||||| ||||||||||||||||||||  ||||||||||||||| | ||||||||||||||||||||| || ||||||||||  ||||||    
T  29467153 aattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctt 29467252  T
Q  201 tca 203  Q
    |||    
T  29467253 tca 29467255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 29424135 - 29423944
Alignment:
Q  1 ctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaa 100  Q
    |||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| | ||||||||| |||||||||||     
T  29424135 ctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatctctaatcgattcccacagcttcatcaagcttcacctccat 29424036  T
Q  101 aatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgatgatttctctaacctaaccaccggcgttaaactcaa 192  Q
    |||| | |||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||| |||| ||||||||||||    
T  29424035 aattccttcaatcgttccttaatccttcgacacaactctgatttctaccaaatcaacgatttctctaacctaactaccgccgttaaactcaa 29423944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 14551240 - 14551040
Alignment:
Q  1 ctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaa 100  Q
    ||||||||||||| ||||||||||||||| |||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||  ||    
T  14551240 ctctctgttaccgccacaatccctcctccaattccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacct-aaa 14551142  T
Q  101 aatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgatgatttctctaacctaaccaccggcgttaaactcaacattcctt 200  Q
    |||| ||||||| |||||||||||||||||||||| |   || ||||||||||| | ||||||||||||||||||||| || ||||||||||  ||||||    
T  14551141 aattccctcaattgttccttaatccttcgacacaagtccaatctctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctt 14551042  T
Q  201 tc 202  Q
    ||    
T  14551041 tc 14551040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 179
Target Start/End: Original strand, 8572754 - 8572910
Alignment:
Q  26 ctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatcc 125  Q
    ||||||||||| ||||| || ||||||||| ||||  ||||||||||||| ||||||| ||| ||||||||| |||||| |||||||||||||||||||     
T  8572754 ctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaatca 8572853  T
Q  126 ttcgacacaactttgatttctaccaaatcgatg---atttctctaacctaaccaccg 179  Q
    |||||| |||||  ||| |||||||||||||||   |||||||| | ||||||||||    
T  8572854 ttcgacgcaactacgatatctaccaaatcgatgatgatttctctgatctaaccaccg 8572910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 10372796 - 10372653
Alignment:
Q  8 ttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcc 107  Q
    ||||||| | |||| || ||||||||||| ||||| || |||||| || ||||  ||||||||||||| || |||||||| |||||||||||||||| ||    
T  10372796 ttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatcaaccttcacctccaaaattccc 10372697  T
Q  108 tcaatcgttccttaatccttcgacacaactttgatttctaccaa 151  Q
    ||||||| ||||||||||||| || ||| || ||| ||||||||    
T  10372696 tcaatcgatccttaatccttcaacgcaaattcgatctctaccaa 10372653  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 9292820 - 9292699
Alignment:
Q  30 gattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatccttcg 129  Q
    ||||||| ||||  || ||||||||| |||||||||||||||| || | |||||  || ||||||||| |||||| |||||| || ||||||||||||||    
T  9292820 gattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaattccctcaaccgatccttaatccttcg 9292721  T
Q  130 acacaactttgatttctaccaa 151  Q
    |||||| || ||| ||||||||    
T  9292720 acacaaattcgatctctaccaa 9292699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 9316921 - 9316770
Alignment:
Q  26 ctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaa---aatttcctcaatcgttccttaa 122  Q
    ||||||||||| ||||| || ||||||||| ||||  |||| ||||| || ||||||||||| ||||||||| ||   |||| ||||||||| |||||||    
T  9316921 ctccgattccgatcaacttcaaaatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaataattccctcaatcgatccttaa 9316822  T
Q  123 tccttcgacacaactttgatttctaccaaatcgatgatttctctaacctaac 174  Q
    ||||||   |||| |  ||  |||||||||||||||||||| || |||||||    
T  9316821 tccttcattacaaatccgaactctaccaaatcgatgatttccctgacctaac 9316770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 10336725 - 10336621
Alignment:
Q  8 ttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcc 107  Q
    ||||||| | |||| || ||||||||||| ||||| || ||||||||| ||||| |||||||||| || || |||||||| |||||||| ||||||| ||    
T  10336725 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttcaccttcaaaattccc 10336626  T
Q  108 tcaat 112  Q
    |||||    
T  10336625 tcaat 10336621  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 9329513 - 9329418
Alignment:
Q  8 ttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaat 103  Q
    ||||||| | |||| || ||||||||||||||||| || ||||||||| ||||| ||||||||||||| |||||||  || ||||||||| |||||    
T  9329513 ttaccggtaaaatcacttctccgattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 9329418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 17565357 - 17565436
Alignment:
Q  16 acaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacc 95  Q
    |||||||||||||||| |||| |||||||||||||||||| |||   |||| |||||||||||||||| ||| |||||||    
T  17565357 acaatccctcctccgactccgatcaacgtcgaaatcacttaaatttttaattgattcccataacttcaccaaccttcacc 17565436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 10354037 - 10353914
Alignment:
Q  30 gattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatccttcg 129  Q
    ||||||| ||||| || |||||| || ||||||||||||||||| | || |||||||| |||||||||  ||||| || |||||  |||||||| |||||    
T  10354037 gattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaaccttcacctcagaaattcccccaatcaatccttaattcttcg 10353938  T
Q  130 acacaactttgatttctaccaaat 153  Q
    |  ||| || ||| ||||||||||    
T  10353937 attcaaattcgatatctaccaaat 10353914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 12011835 - 12011922
Alignment:
Q  15 cacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaa 102  Q
    ||||||| || ||||||||||| ||||| || ||||||||| ||||| |||||||||| || ||||||| ||| ||||||||| ||||    
T  12011835 cacaatcacttctccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttcacctcaaaaa 12011922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 9283427 - 9283512
Alignment:
Q  26 ctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaa 111  Q
    ||||||||||| ||||| || |||||||||| ||||||||| ||||| || || |||||||| ||||||||| ||| || ||||||    
T  9283427 ctccgattccgatcaacttctaaatcacttcgatccctaatagattctcacaaattcatcaaccttcacctcaaaagttccctcaa 9283512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 10348717 - 10348629
Alignment:
Q  8 ttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacct 96  Q
    ||||||| | |||| || ||||||||||| ||||| || ||||||||| ||||| ||||||||||||  || |||||||| ||||||||    
T  10348717 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattcatcaaccttcacct 10348629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 7612810 - 7612716
Alignment:
Q  8 ttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaa 102  Q
    ||||||| |||| |||||||||||||||| ||||  || ||||| ||| ||||| |||| |||||||| |||||||  || ||||||||| ||||    
T  7612810 ttaccggtacaaaccctcctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttcacctcaaaaa 7612716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 7114901 - 7114965
Alignment:
Q  29 cgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttca 93  Q
    |||||||| ||||| || ||||||||| ||||| ||||||||||||| || |||||||| |||||    
T  7114901 cgattccgatcaacttcaaaatcacttaaatccttaatcgattcccacaaattcatcaaccttca 7114965  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 9060333 - 9060408
Alignment:
Q  8 ttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttca 83  Q
    |||||||  ||||| || ||||||||||| ||||| || ||||||||| ||||| |||||||||| || |||||||    
T  9060333 ttaccggttcaatcacttctccgattccgatcaacttcaaaatcacttaaatccttaatcgattctcacaacttca 9060408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 8578760 - 8578854
Alignment:
Q  8 ttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaa 102  Q
    ||||||| ||||||||| ||||||||||| ||||  || |||||||||| |||| | || |||||||| | ||||| ||||| | ||||| ||||    
T  8578760 ttaccggtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaacattacctcaaaaa 8578854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 9275438 - 9275333
Alignment:
Q  7 gttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttc 106  Q
    |||||| | |||||| || ||| ||||||| ||||  || ||||||||| ||||  | || |||||||| ||||||||||| ||||| ||| |||||| |    
T  9275438 gttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaaccttcatctcaaaaattcc 9275339  T
Q  107 ctcaat 112  Q
    ||||||    
T  9275338 ctcaat 9275333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 41965975 - 41966154
Alignment:
Q  26 ctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatcc 125  Q
    ||||||||||| ||||| ||||||||||||| |||| ||||||||||||| ||||||||||| |||||||||  ||| | ||||||||| ||||||||||    
T  41965975 ctccgattccgatcaacctcgaaatcacttcgatccttaatcgattcccacaacttcatcaaccttcacctcagaaaatccctcaatcgatccttaatcc 41966074  T
Q  126 ttcgacacaactttgatttctaccaaatcgat---gatttctctaacctaaccaccggcgttaaactcaacattcctttc 202  Q
    |||||| ||||  |||| |||||||  |||||   |||||||||||||||||||||| ||||  |||||||  |||||||    
T  41966075 ttcgactcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgttccactcaaccatcctttc 41966154  T

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Target: scaffold0667 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 5373 - 5185
Alignment:
Q  8 ttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcc 107  Q
    ||||||| | |||| || ||||||||||| ||||| || ||||||||| ||||| |||||||||| || ||||||||||| ||||||| | |||||| ||    
T  5373 ttaccggtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatccataatcgattctcacaacttcatcaaccttcaccgcaaaaattccc 5274  T
Q  108 tcaatcgttccttaatccttcgacacaactttgatttctaccaaatc---gatgatttctctaacctaaccaccggcgttaaactcaac 193  Q
    ||||| | ||||| |||||||||| ||  |   || |||||||||||   ||||||||||| ||||| ||||||| ||||  |||||||    
T  5273 tcaatagatccttcatccttcgactcagatccaatatctaccaaatcgaagatgatttctcaaacctcaccaccgccgttccactcaac 5185  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 26575775 - 26575650
Alignment:
Q  26 ctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatcc 125  Q
    ||||||||||| ||||| || ||||||||| ||| | ||||||||||| | || |||||||| |||||||||  ||||| || |||||| ||||||||||    
T  26575775 ctccgattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaaccttcacctcagaaattcccccaatcgatccttaatcc 26575676  T
Q  126 ttcgacacaactttgatttctaccaa 151  Q
    |||||  ||| || ||| ||||||||    
T  26575675 ttcgattcaaattcgatatctaccaa 26575650  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 37463418 - 37463293
Alignment:
Q  26 ctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatcc 125  Q
    ||||||||||| ||||| || ||||||||| ||||  |||||||||| || ||||||||||| ||||| ||| |||||  ||||||||  ||| |||||     
T  37463418 ctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatccgtaatca 37463319  T
Q  126 ttcgacacaactttgatttctaccaa 151  Q
    ||||| ||||||  ||| ||||||||    
T  37463318 ttcgaaacaactccgatatctaccaa 37463293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 36225655 - 36225575
Alignment:
Q  17 caatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctc 97  Q
    |||||||||||||||||||| ||||| || ||||||||| ||||  |||||||||| || |||||||  || |||||||||    
T  36225655 caatccctcctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatcttcacctc 36225575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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