View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10505_low_2 (Length: 365)
Name: NF10505_low_2
Description: NF10505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10505_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 36330865 - 36331198
Alignment:
| Q |
19 |
atattggcttatttgactttatcgtagtttatacatatgatcgattaatgataattacttaacgaaactatttctatccaaacagagcgttaaaaggaaa |
118 |
Q |
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| T |
36330865 |
atattggcttatttgactttatcgtagtttatacatatgatcgattaatgataattacttaaggaaactatttctatccaaacagagcgttaaaaggaaa |
36330964 |
T |
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| Q |
119 |
agctaccttgaaatgacaaggaatgcgatcctttacggaaacagggtcgtagcgcttattcttcatagactcttcctctgcatcttgttcctcgtattca |
218 |
Q |
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| T |
36330965 |
agctaccttgaaatgagaaggaatgcgatcctttacggaaacagggtcgtagcgcttattcttcatagactcttcctctgcatcttgttcctcgtattca |
36331064 |
T |
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| Q |
219 |
ta---aacatcagtggtggcttcatcgaaatggacattggtttgaatctgtttgttcaaagatgaaggcaaacgaggattggttttcgactttttacttc |
315 |
Q |
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| T |
36331065 |
taaacaacatcagtggtggcttcatcgaaatggacattggtttgaatctgtttgttcaaagatgaaggcgaacgaggattggttttcgactttttacttc |
36331164 |
T |
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| Q |
316 |
ggaggttggtgccgttcatctgttttcgtttctt |
349 |
Q |
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| T |
36331165 |
ggaggttggtgtcgttcatctgttttcgtttctt |
36331198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 44371826 - 44371862
Alignment:
| Q |
257 |
ttgaatctgtttgttcaaagatgaaggcaaacgagga |
293 |
Q |
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| T |
44371826 |
ttgaatctcttttttcaaagatgaaggcaaacgagga |
44371862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 44380681 - 44380717
Alignment:
| Q |
257 |
ttgaatctgtttgttcaaagatgaaggcaaacgagga |
293 |
Q |
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| T |
44380681 |
ttgaatctcttttttcaaagatgaaggcaaacgagga |
44380717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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