View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10505_low_21 (Length: 249)
Name: NF10505_low_21
Description: NF10505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10505_low_21 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 37 - 249
Target Start/End: Complemental strand, 51089280 - 51089068
Alignment:
| Q |
37 |
ctacacttttttcattttatgtagnnnnnnntaattccaataagccgtccgattgagctggatccgtcctatttatttgaagatggaaacatagtgttag |
136 |
Q |
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| T |
51089280 |
ctacacttttttcattttatgtagaaaaaaaaaattccaagaagccgtccgattgagctggatccgtcctatttatttgaagatggaaacatagtgttaa |
51089181 |
T |
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| Q |
137 |
ggtgggcagtcttctaacttgaattcgatgctcattcaagtgatacttttatatgaactgctactactacatgtctacctctttatataaactatgaaga |
236 |
Q |
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| T |
51089180 |
ggtgggcagtcttctaaactgaattcgaagctcattcaagtgatacttttatatgaactgctactactacatgtctacctctttatataaactatgaaga |
51089081 |
T |
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| Q |
237 |
gatttaaagaaat |
249 |
Q |
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| T |
51089080 |
gatttaaagaaat |
51089068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 69 - 249
Target Start/End: Complemental strand, 50986114 - 50985934
Alignment:
| Q |
69 |
aattccaataagccgtccgattgagctggatccgtcctatttatttgaagatggaaacatagtgttagggtgggcagtcttctaacttgaattcgatgct |
168 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||| |
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| T |
50986114 |
aattccaagaagccgtccgattgagctggatccgtcctatttatttgaagatggaaacatagtgttaaggtgggcagtcttctaaactgaattcgaagct |
50986015 |
T |
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| Q |
169 |
cattcaagtgatacttttatatgaactgctactactacatgtctacctctttatataaactatgaagagatttaaagaaat |
249 |
Q |
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| T |
50986014 |
cattcaagtgatacttttatatgaactgctactactacatgtctacctctttatataaactatgaagagatttaaagaaat |
50985934 |
T |
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