View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10505_low_29 (Length: 238)

Name: NF10505_low_29
Description: NF10505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10505_low_29
NF10505_low_29
[»] chr7 (4 HSPs)
chr7 (1-222)||(38176359-38176580)
chr7 (61-222)||(41192299-41192460)
chr7 (92-159)||(5572393-5572460)
chr7 (32-107)||(42415154-42415229)
[»] chr3 (1 HSPs)
chr3 (1-221)||(1527042-1527262)
[»] chr2 (5 HSPs)
chr2 (1-222)||(4318839-4319059)
chr2 (3-221)||(28626475-28626693)
chr2 (1-139)||(6409453-6409591)
chr2 (43-222)||(18977347-18977526)
chr2 (43-222)||(34212544-34212723)
[»] chr1 (2 HSPs)
chr1 (43-222)||(46342742-46342921)
chr1 (43-159)||(44585891-44586007)
[»] chr5 (1 HSPs)
chr5 (43-222)||(22497804-22497983)
[»] chr8 (1 HSPs)
chr8 (50-222)||(8618485-8618656)
[»] scaffold0094 (1 HSPs)
scaffold0094 (50-107)||(15118-15175)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38176359 - 38176580
Alignment:
Q  1 aaattgttgtaatagtgccctgcagtcatcaatgatcctacaaaattctgcttggttgttattcttatcatatatgctatccaccactagtttacaatct 100  Q
    ||||||||||||||||| |||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38176359 aaattgttgtaatagtgacctgcagtcatcaatgatactaccaaattctgcctggttgttattcttatcatatatgctatccaccactagtttacaatct 38176458  T
Q  101 agttctaattgcacatttgataattctaactgtccaagccacaaaatggcatcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38176459 agttctaattgcacatttgataattctaactgtccaagccacaaaatggcatcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcat 38176558  T
Q  201 accaatttgtagcagcttttat 222  Q
    ||||||||||||||||||||||    
T  38176559 accaatttgtagcagcttttat 38176580  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 222
Target Start/End: Complemental strand, 41192460 - 41192299
Alignment:
Q  61 attcttatcatatatgctatccaccactagtttacaatctagttctaattgcacatttgataattctaactgtccaagccacaaaatggcatcgcgtaat 160  Q
    |||||||||||||||||| || | ||| ||||||||||||||||| |  ||||  | ||||||| |  |||||||| |||||||||| | ||| | |||     
T  41192460 attcttatcatatatgctctcaatcacaagtttacaatctagttcaatgtgcatttatgataatcccgactgtccatgccacaaaatagtatcacataaa 41192361  T
Q  161 ccaactgcttccgcttcttgaggaggaggacaaccttcataccaatttgtagcagcttttat 222  Q
    || ||||||||  |||||| |||| || ||   ||||||||||| |||| ||||||||||||    
T  41192360 cccactgcttcaccttcttaaggaagatgattgccttcataccattttgcagcagcttttat 41192299  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 5572393 - 5572460
Alignment:
Q  92 ttacaatctagttctaattgcacatttgataattctaactgtccaagccacaaaatggcatcgcgtaa 159  Q
    |||||||||||||| || ||||||||||||| | | || ||||||||||| | |||||||| ||||||    
T  5572393 ttacaatctagttcaaaatgcacatttgatagtcccaaatgtccaagccaaataatggcattgcgtaa 5572460  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 42415229 - 42415154
Alignment:
Q  32 atgatcctacaaaattctgcttggttgttattcttatcatatatgctatccaccactagtttacaatctagttcta 107  Q
    ||||| |||| ||| || ||||| ||| ||||| ||||| | |||||||| ||||||||||| |||||||||||||    
T  42415229 atgatactaccaaactccgcttgattgctattcctatcaaaaatgctatcaaccactagtttgcaatctagttcta 42415154  T

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Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1527262 - 1527042
Alignment:
Q  1 aaattgttgtaatagtgccctgcagtcatcaatgatcctacaaaattctgcttggttgttattcttatcatatatgctatccaccactagtttacaatct 100  Q
    ||||||||||||||||| |||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1527262 aaattgttgtaatagtgacctgcagtcatcaatgatactaccaaattctgcctggttgttattcttatcatatatgctatccaccactagtttacaatct 1527163  T
Q  101 agttctaattgcacatttgataattctaactgtccaagccacaaaatggcatcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1527162 agttctaattgcacatttgataattctaactgtccaagccacaaaatggcatcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcat 1527063  T
Q  201 accaatttgtagcagctttta 221  Q
    |||||||||||||||||||||    
T  1527062 accaatttgtagcagctttta 1527042  T

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Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4318839 - 4319059
Alignment:
Q  1 aaattgttgtaatagtgccctgcagtcatcaatgatcctacaaaattctgcttggttgttattcttatcatatatgctatccaccactagtttacaatct 100  Q
    ||||| ||||||||||| |||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||    
T  4318839 aaatttttgtaatagtgacctgcagtcatcaatgatactaccaaattctgcctggttgttattcttatcatatatgctatcaac-actagtttacaatct 4318937  T
Q  101 agttctaattgcacatttgataattctaactgtccaagccacaaaatggcatcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcat 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4318938 agttctaattgcacatttgataattttaactgtccaagccacaaaatggcatcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcat 4319037  T
Q  201 accaatttgtagcagcttttat 222  Q
    ||||| ||||||||||||||||    
T  4319038 accaagttgtagcagcttttat 4319059  T

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Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 28626475 - 28626693
Alignment:
Q  3 attgttgtaatagtgccctgcagtcatcaatgatcctacaaaattctgcttggttgttattcttatcatatatgctatccaccactagtttacaatctag 102  Q
    ||||||||||||||  |||||||||||  ||||| |||| ||||||| | |||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  28626475 attgttgtaatagttacctgcagtcattgatgatactaccaaattcttcctggtagttattcttatcatatatgctatcaaccactagtttacaatctag 28626574  T
Q  103 ttctaattgcacatttgataattctaactgtccaagccacaaaatggcatcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcatac 202  Q
    ||||| | ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||    
T  28626575 ttctattagcacatttgataattctaactatccaagccacaaaatggcatcacgtaatccaactgcttccgcttcttgaggagggagacaaccttcatac 28626674  T
Q  203 caatttgtagcagctttta 221  Q
    ||| |||||||||||||||    
T  28626675 caagttgtagcagctttta 28626693  T

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Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 6409591 - 6409453
Alignment:
Q  1 aaattgttgtaatagtgccctgcagtcatcaatgatcctacaaaattctgcttggttgttattcttatcatatatgctatccaccactagtttacaatct 100  Q
    ||||||||||||||||| |||||||||||||||||| |||| ||||||| | ||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  6409591 aaattgttgtaatagtgacctgcagtcatcaatgatactaccaaattctacctggttgttattcttatcatatatactatcaaccactagtttacaatct 6409492  T
Q  101 agttctaattgcacatttgataattctaactgtccaagc 139  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  6409491 agttctattttcacatttgataattctaactgtccaagc 6409453  T

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Target: chr2; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 43 - 222
Target Start/End: Original strand, 18977347 - 18977526
Alignment:
Q  43 aaattctgcttggttgttattcttatcatatatgctatccaccactagtttacaatctagttctaat-tgcacatttgataattctaactgtccaagcca 141  Q
    |||||| |||||||| |||||||||||| |||||||||| |||||||| ||||||||||||| |||| |||||||   ||||| | ||||||||||||||    
T  18977347 aaattcggcttggttattattcttatcacatatgctatcaaccactagcttacaatctagtt-taatgtgcacatccaataatcccaactgtccaagcca 18977445  T
Q  142 caaaatggcatcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcataccaatttgtagcagcttttat 222  Q
    |||||| ||||| ||||| || || ||||| |||||||||||| |||||   ||||| ||||||||||||||||| |||||    
T  18977446 caaaatagcatcacgtaaacccaccgcttcagcttcttgaggaagaggatttccttcgtaccaatttgtagcagcctttat 18977526  T

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Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 222
Target Start/End: Complemental strand, 34212723 - 34212544
Alignment:
Q  43 aaattctgcttggttgttattcttatcatatatgctatccaccactagtttacaatctagttctaattgcacatttgataattctaactgtccaagccac 142  Q
    |||||| | |||||| |||||||||||| |||||||||| |||||||| |||||||||||||| |  |||||||   ||||| | |||||||||||||||    
T  34212723 aaattcggtttggttattattcttatcacatatgctatcaaccactagcttacaatctagttcaatgtgcacatccaataatcccaactgtccaagccac 34212624  T
Q  143 aaaatggcatcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcataccaatttgtagcagcttttat 222  Q
    |||||  |||| ||||| || || ||||| |||||||||||| |||||   ||||  ||||||||||||||||| |||||    
T  34212623 aaaataacatcacgtaaacccaccgcttcagcttcttgaggaagaggatttcctttgtaccaatttgtagcagcctttat 34212544  T

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Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 43 - 222
Target Start/End: Complemental strand, 46342921 - 46342742
Alignment:
Q  43 aaattctgcttggttgttattcttatcatatatgctatccaccactagtttacaatctagttctaattgcacatttgataattctaactgtccaagccac 142  Q
    |||||| |||||||| |||||||||||| |||||||||| |||||| |||||||||||||||| |  ||||||| | ||||| |||| ||||||||||||    
T  46342921 aaattcggcttggttattattcttatcacatatgctatcaaccacttgtttacaatctagttcaatgtgcacatctaataatcctaattgtccaagccac 46342822  T
Q  143 aaaatggcatcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcataccaatttgtagcagcttttat 222  Q
    || || ||||||||| |||| |||||||| |||||||||| | |||||   ||||| || ||||||||||||||||||||    
T  46342821 aagatagcatcgcgtgatcccactgcttcagcttcttgagaaagaggatttccttcgtatcaatttgtagcagcttttat 46342742  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 159
Target Start/End: Original strand, 44585891 - 44586007
Alignment:
Q  43 aaattctgcttggttgttattcttatcatatatgctatccaccactagtttacaatctagttctaattgcacatttgataattctaactgtccaagccac 142  Q
    |||||| |||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| |  ||||||| ||||||| | ||||||| |||||||    
T  44585891 aaattcagcttggttattattcttatcacatatgctatcaaccactagtttacaatctagttcaatgtgcacatatgataatcccaactgtcaaagccac 44585990  T
Q  143 aaaatggcatcgcgtaa 159  Q
    ||||| |||| ||||||    
T  44585991 aaaatagcattgcgtaa 44586007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 43 - 222
Target Start/End: Original strand, 22497804 - 22497983
Alignment:
Q  43 aaattctgcttggttgttattcttatcatatatgctatccaccactagtttacaatctagttctaattgcacatttgataattctaactgtccaagccac 142  Q
    |||||| |||||||| |||||||||||| |||||||||| |||||||  |||||||||||||| |  |||||||  |||||| | |||| ||||||||||    
T  22497804 aaattcggcttggttattattcttatcacatatgctatcaaccactatcttacaatctagttcaatgtgcacatccgataatcccaactctccaagccac 22497903  T
Q  143 aaaatggcatcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcataccaatttgtagcagcttttat 222  Q
    ||||| ||||| ||||| || || ||||| |||||||||||| |||||   ||||| ||||||||||||||||| |||||    
T  22497904 aaaatagcatcacgtaaacccaccgcttcagcttcttgaggaagaggatttccttcgtaccaatttgtagcagcctttat 22497983  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 8618485 - 8618656
Alignment:
Q  50 gcttggttgttattcttatcatatatgctatccaccactagtttacaatctagttctaattgcacatttgataattctaactgtccaagccacaaaatgg 149  Q
    |||||||| |||||||||||| |||||||||| |||||||| |||||||||||||| |  ||||||| ||||||| | |||||||||||||| ||||| |    
T  8618485 gcttggttattattcttatcacatatgctatcaaccactagcttacaatctagttcgatgtgcacatctgataatcccaactgtccaagccataaaatag 8618584  T
Q  150 catcgcgtaatccaactgcttccgcttcttgaggaggaggacaaccttcataccaatttgtagcagcttttat 222  Q
    |||| ||||| || |  ||||| |||||||||||| |||||   ||||| ||||||||||||||||| |||||    
T  8618585 catcacgtaaacccagcgcttcagcttcttgagga-gaggatttccttcgtaccaatttgtagcagcctttat 8618656  T

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Target: scaffold0094 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 15175 - 15118
Alignment:
Q  50 gcttggttgttattcttatcatatatgctatccaccactagtttacaatctagttcta 107  Q
    ||||| ||| ||||| ||||| | |||||||| ||||||||||| |||||||||||||    
T  15175 gcttgattgctattcctatcaaaaatgctatcaaccactagtttgcaatctagttcta 15118  T

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