View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10505_low_3 (Length: 361)
Name: NF10505_low_3
Description: NF10505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10505_low_3 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 13 - 339
Target Start/End: Original strand, 37651951 - 37652277
Alignment:
| Q |
13 |
agcatagggaacagggatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagaccggtggtagggtagtaaaagtaactt |
112 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
37651951 |
agcataaggaacagggatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagacctgtggtagggtagtaaaagtaactt |
37652050 |
T |
|
| Q |
113 |
ccaatctgatccttcacttggaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaagggtaccatcttgccatgaattcttcctct |
212 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37652051 |
ccaatttgatccttcacttgaaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaagggtaccatcttgccatgaattcttcctct |
37652150 |
T |
|
| Q |
213 |
gttgaacaccgtgccatgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacaacattgttgttgctggtgctgttgatttcaggtcctgg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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|
| T |
37652151 |
gttgaacaccgtgccatgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacgacattgttgttgctagtgctgttgatttcaggtcctgg |
37652250 |
T |
|
| Q |
313 |
gaattgaccgttaataaggataccctg |
339 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
37652251 |
gaattgaccgttaataaggataccctg |
37652277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 339
Target Start/End: Original strand, 37634924 - 37635250
Alignment:
| Q |
13 |
agcatagggaacagggatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagaccggtggtagggtagtaaaagtaactt |
112 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
37634924 |
agcataaggaacagggatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagacctgtggtagggtagtaaaagtaactt |
37635023 |
T |
|
| Q |
113 |
ccaatctgatccttcacttggaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaagggtaccatcttgccatgaattcttcctct |
212 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37635024 |
ccaatttgatccttcacttggaatttgtaggtatagttagtcccaggaagaatggggcattgaacaccagcggtaccatcttgccatgaattcttcctct |
37635123 |
T |
|
| Q |
213 |
gttgaacaccgtgccatgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacaacattgttgttgctggtgctgttgatttcaggtcctgg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
37635124 |
gttgaacaccgtgccatgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacaacattgttattgctagtgctgttgatttcaggtcctgg |
37635223 |
T |
|
| Q |
313 |
gaattgaccgttaataaggataccctg |
339 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
37635224 |
gaattgaccgttaataaggataccctg |
37635250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 339
Target Start/End: Original strand, 37637838 - 37638164
Alignment:
| Q |
13 |
agcatagggaacagggatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagaccggtggtagggtagtaaaagtaactt |
112 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37637838 |
agcataaggaacagggatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagacctgtggtagggtagtaaaagtaactt |
37637937 |
T |
|
| Q |
113 |
ccaatctgatccttcacttggaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaagggtaccatcttgccatgaattcttcctct |
212 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37637938 |
ccaatttgatccttcacttggaatttgtaggtatagttagtcccaggaagaatggggcattgaacaccagcggtaccatcttgccatgaattcttcctct |
37638037 |
T |
|
| Q |
213 |
gttgaacaccgtgccatgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacaacattgttgttgctggtgctgttgatttcaggtcctgg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
37638038 |
gttgaacaccgtgccatgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacaacattgttattgctagtgctgttgatttcaggtcctgg |
37638137 |
T |
|
| Q |
313 |
gaattgaccgttaataaggataccctg |
339 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
37638138 |
gaattgaccgttaataaggataccctg |
37638164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 339
Target Start/End: Original strand, 37646126 - 37646452
Alignment:
| Q |
13 |
agcatagggaacagggatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagaccggtggtagggtagtaaaagtaactt |
112 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37646126 |
agcataaggaacagggatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagacctgtggtagggtagtaaaagtaactt |
37646225 |
T |
|
| Q |
113 |
ccaatctgatccttcacttggaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaagggtaccatcttgccatgaattcttcctct |
212 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37646226 |
ccaatttgatccttcacttggaatttgtaggtatagttagtcccaggaagaatggggcattgaacaccagcggtaccatcttgccatgaattcttcctct |
37646325 |
T |
|
| Q |
213 |
gttgaacaccgtgccatgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacaacattgttgttgctggtgctgttgatttcaggtcctgg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
37646326 |
gttgaacaccgtgccatgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacaacattgttattgctagtgctgttgatttcaggtcctgg |
37646425 |
T |
|
| Q |
313 |
gaattgaccgttaataaggataccctg |
339 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
37646426 |
gaattgaccgttaataaggataccctg |
37646452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 339
Target Start/End: Original strand, 37649039 - 37649365
Alignment:
| Q |
13 |
agcatagggaacagggatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagaccggtggtagggtagtaaaagtaactt |
112 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37649039 |
agcataaggaacagggatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagacctgtggtagggtagtaaaagtaactt |
37649138 |
T |
|
| Q |
113 |
ccaatctgatccttcacttggaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaagggtaccatcttgccatgaattcttcctct |
212 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37649139 |
ccaatttgatccttcacttggaatttgtaggtatagttagtcccaggaagaatggggcattgaacaccagcggtaccatcttgccatgaattcttcctct |
37649238 |
T |
|
| Q |
213 |
gttgaacaccgtgccatgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacaacattgttgttgctggtgctgttgatttcaggtcctgg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
37649239 |
gttgaacaccgtgccatgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacaacattgttattgctagtgctgttgatttcaggtcctgg |
37649338 |
T |
|
| Q |
313 |
gaattgaccgttaataaggataccctg |
339 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
37649339 |
gaattgaccgttaataaggataccctg |
37649365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 335
Target Start/End: Original strand, 37640752 - 37641074
Alignment:
| Q |
13 |
agcatagggaacagggatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagaccggtggtagggtagtaaaagtaactt |
112 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37640752 |
agcataaggaacagggatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagacctgtggtagggtagtaaaagtaactt |
37640851 |
T |
|
| Q |
113 |
ccaatctgatccttcacttggaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaagggtaccatcttgccatgaattcttcctct |
212 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37640852 |
ccaatttgatccttcacttggaatttgtaggtatagttagtcccaggaagaatggggcattgaacaccaggggtaccatcttgccatgaattcttcctct |
37640951 |
T |
|
| Q |
213 |
gttgaacaccgtgccatgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacaacattgttgttgctggtgctgttgatttcaggtcctgg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
37640952 |
gttgaacaccgtgccatgtgaaaagcaatggttcatcaaggttgttgaatacattagcaacaacattgttattgctagtgctgttgatttcaggtcctgg |
37641051 |
T |
|
| Q |
313 |
gaattgaccgttaataaggatac |
335 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
37641052 |
gaattgaccattaataaggatac |
37641074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 32388261 - 32388586
Alignment:
| Q |
13 |
agcatagggaacagggatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagaccggtggtagggtagtaaaagtaactt |
112 |
Q |
| |
|
|||||| || ||||||||||||| || ||| ||| ||||| ||||||| |||||| | ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
32388261 |
agcatatgggacagggatcaacaatcggctgtagactctaattccaccgataccaccggcagctctcatgagaccggtagtagggtagtaaaagtaacta |
32388360 |
T |
|
| Q |
113 |
ccaatctgatccttcacttggaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaagggtaccatcttgccatgaattcttcctct |
212 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||| ||||| || |||||| ||||| || || || ||||| ||| || || ||||| | |
|
|
| T |
32388361 |
ccaatttgatccttaacctggaatttgtaggtgtagttggttcccggggcaataggacattggactcccgatgttccatcggcccacgagtttttccttt |
32388460 |
T |
|
| Q |
213 |
gttgaacaccgtgccatgtgaaaagcaatggttcatcaaggttgttgaatacattaacaacaacattgttgttgctggtgctgttgatttcaggtcctgg |
312 |
Q |
| |
|
|||||| |||| |||||||||||| | ||| ||||||||||||||||| || ||||| |||| |||||||||||||| | ||| ||||||||||| || |
|
|
| T |
32388461 |
gttgaataccgctccatgtgaaaaggagtggctcatcaaggttgttgaaaacgttaactacaatgttgttgttgctggtaccgttaatttcaggtcccgg |
32388560 |
T |
|
| Q |
313 |
gaattgaccgttaataaggataccct |
338 |
Q |
| |
|
|||||||||||| || || ||||||| |
|
|
| T |
32388561 |
gaattgaccgttgatgagaataccct |
32388586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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