View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10505_low_31 (Length: 229)
Name: NF10505_low_31
Description: NF10505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10505_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 192
Target Start/End: Original strand, 30286870 - 30287055
Alignment:
| Q |
7 |
aatttaacatggtttatgccttacaagtttggtttatgacttttggtagctctgttaggtcgtttatcaatttttattttcattatttcctaatccacat |
106 |
Q |
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| T |
30286870 |
aatttaacatggtttatgccttacaagtttggtttatgacttttggtagctctgttaggtcgtttatcaatttttattttcattatttcctaatccacat |
30286969 |
T |
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| Q |
107 |
aagtgaagattttgattgataaagactttctcaacctcctcaattcatatagttgcatacagcatactgtttatatacaataatag |
192 |
Q |
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| T |
30286970 |
aagtgaagattttgattgataaagactttctcaacctcctcaattcatatagttgcatacagcatactgtttatatacaataatag |
30287055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 30287229 - 30287269
Alignment:
| Q |
187 |
taataggttatctctacatgaggtaatcatatttgaggtgt |
227 |
Q |
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| T |
30287229 |
taataggttctctctatatgaggtaatcatatttgaggtgt |
30287269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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