View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10505_low_35 (Length: 226)
Name: NF10505_low_35
Description: NF10505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10505_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 28496885 - 28497078
Alignment:
| Q |
15 |
agagaataacgtgaaatctnnnnnnngttgtatgaaggacgccaataatactatttaatttataaagttttgtcaattttattagaaattgtttgcacaa |
114 |
Q |
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| T |
28496885 |
agagaaaaacgtgaaatctaaaaaaagttatatgaaggacaccaataatactatttaatttataaagttttgtcaattttattagaaattgtttgcacaa |
28496984 |
T |
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| Q |
115 |
cgtcagcatgtttgattttgaataacttaatttcaaattttacagaagtagtttttcgtcatataatgggttgcattattggagatggataaag |
208 |
Q |
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| T |
28496985 |
cgtcagcatgtttgattttgaataacttaatttcaaattttacagaagtaatttttcgtcatataatgggttccattattggagatggagaaag |
28497078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 45 - 203
Target Start/End: Original strand, 28496170 - 28496329
Alignment:
| Q |
45 |
tatgaaggacgccaataatactatttaatttataaagttttgtcaattttattagaaattgtttgcacaacgtcagcatgtttgattttgaataacttaa |
144 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28496170 |
tatgaaggacgccaataatattatttaatttataaagttttgtcaattttattagaaattgtttgcacaacgtcagcatgtttgattttgtataacttaa |
28496269 |
T |
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| Q |
145 |
tttcaaa-ttttacagaagtagtttttcgtcatataatgggttgcattattggagatgga |
203 |
Q |
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||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
28496270 |
tttcaaatttttacagaagtaactttttgtcatataatgggttgcattattggagatgga |
28496329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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