View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10505_low_40 (Length: 208)

Name: NF10505_low_40
Description: NF10505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10505_low_40
NF10505_low_40
[»] chr2 (15 HSPs)
chr2 (7-190)||(15003973-15004155)
chr2 (21-189)||(31969206-31969374)
chr2 (31-192)||(14520194-14520355)
chr2 (21-189)||(15013289-15013454)
chr2 (32-178)||(15007890-15008036)
chr2 (31-191)||(14552388-14552548)
chr2 (91-191)||(14850513-14850613)
chr2 (31-178)||(14547191-14547338)
chr2 (91-190)||(15019780-15019879)
chr2 (84-174)||(14567444-14567534)
chr2 (91-175)||(14512377-14512461)
chr2 (91-175)||(14528827-14528911)
chr2 (91-175)||(14543053-14543137)
chr2 (32-191)||(15023814-15023973)
chr2 (95-178)||(14534052-14534135)
[»] chr3 (1 HSPs)
chr3 (93-160)||(38524886-38524953)


Alignment Details
Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 15003973 - 15004155
Alignment:
Q  7 agaagcagagacatcaaaatccaccatcaaattgatattagcctctagaaggtgatagggataaaaagtaaacgatcttgaatgtcgaattaagccaaca 106  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15003973 agaatcagaaacatcaaaatccaccatcaaattgatattagcctctagaaagtgatagggataaaaagtaaacgatcttgaatatcgaattaagccaaca 15004072  T
Q  107 atggtatccttgttggttttcgaaaacctatttaacaattcaaaaagagggattattcgtttgtccaagctagattgtaaaatt 190  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||  ||||||||||    
T  15004073 atggtatccttgttgg-tttcgaaaacctatttaacaattcaaaaagagggattattcgattctccaagctactttgtaaaatt 15004155  T

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Target: chr2; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 31969374 - 31969206
Alignment:
Q  21 caaaatccaccatcaaattgatattagcctctagaaggtgatagggataaaaagtaaacgatcttgaatgtcgaattaagccaacaatggtatccttgtt 120  Q
    ||||||| ||||||||||||||||||||||||||||||| |  |||||||| | ||||||| ||||||||||||||||||  |||||| |||||||||||    
T  31969374 caaaatcaaccatcaaattgatattagcctctagaaggttaaggggataaacaataaacgaccttgaatgtcgaattaagtaaacaatagtatccttgtt 31969275  T
Q  121 ggttttcgaaaacctatttaacaattcaaaaagagggattattcgtttgtccaagctagattgtaaaat 189  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||    
T  31969274 ggttttcgaaaacctatttaacaattgaaaaagagggattattcgtttgtccaagctactttgtaaaat 31969206  T

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Target: chr2; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 14520355 - 14520194
Alignment:
Q  31 catcaaattgatattagcctctagaaggtgatagggataaaaagtaaacgatcttgaatgtcgaattaagccaacaatggtatccttgttggttttcgaa 130  Q
    ||||||||||||||||||||||||||  ||||||||||||| | ||||||||  ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  14520355 catcaaattgatattagcctctagaacatgatagggataaataataaacgatagtgaatttcgaattaagcaaacaatggtatccttgttggttttcgaa 14520256  T
Q  131 aacctatttaacaattcaaaaagagggattattcgtttgtccaagctagattgtaaaatttt 192  Q
    |||||||||||||||| ||||||||||||||||||||| ||||| |||  ||||||||||||    
T  14520255 aacctatttaacaattgaaaaagagggattattcgtttctccaaactactttgtaaaatttt 14520194  T

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Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 15013454 - 15013289
Alignment:
Q  21 caaaatccaccatcaaattgatattagcctctagaaggtgatagggataaaaagtaaacgatcttgaatgtcgaattaagccaacaatggtatccttgtt 120  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||   |   ||||||| ||||||| | ||||||||  |||||| |||||||||||    
T  15013454 caaaatcaaccatcaaattgatattagcctctagaaggtgaaggggagtta---taaacgaccttgaatttagaattaagtaaacaatagtatccttgtt 15013358  T
Q  121 ggttttcgaaaacctatttaacaattcaaaaagagggattattcgtttgtccaagctagattgtaaaat 189  Q
    ||||||| ||||||||||||| |||| ||||||||||||||| |||||||||||||||  |||||||||    
T  15013357 ggttttcaaaaacctatttaataattgaaaaagagggattatccgtttgtccaagctactttgtaaaat 15013289  T

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Target: chr2; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 32 - 178
Target Start/End: Complemental strand, 15008036 - 15007890
Alignment:
Q  32 atcaaattgatattagcctctagaaggtgata-gggataaaaagtaaacgatcttgaatgtcgaattaagccaacaatggtatccttgttggttttcgaa 130  Q
    |||||||||||||||||| | | ||||||||| ||| ||| || |||||||  |||||||||||| ||||| ||||||| ||||||||||||||||  |     
T  15008036 atcaaattgatattagccacaataaggtgatatgggctaataa-taaacgacattgaatgtcgaagtaagcaaacaatgatatccttgttggttttaaag 15007938  T
Q  131 aacctatttaacaattcaaaaagagggattattcgtttgtccaagcta 178  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||    
T  15007937 aacctacttaacaattcaaaaagagggattattcgtttgcccaagcta 15007890  T

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Target: chr2; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 31 - 191
Target Start/End: Complemental strand, 14552548 - 14552388
Alignment:
Q  31 catcaaattgatattagcctctagaaggtgatagggataaaaagtaaacgatcttgaatgtcgaattaagccaacaatggtatccttgttggttttcgaa 130  Q
    ||||| ||| ||||||||| | | |||||||| |||||||  || || | || | |||||||||||||||| |||||| ||||||||||| |||||  |     
T  14552548 catcagattaatattagccacaataaggtgatggggataactagcaacccatttcgaatgtcgaattaagcaaacaattgtatccttgttagttttaaag 14552449  T
Q  131 aacctatttaacaattcaaaaagagggattattcgtttgtccaagctagattgtaaaattt 191  Q
    ||| |  |||||||||||||||||||||||||||||||||||| ||||  |||||||||||    
T  14552448 aacattcttaacaattcaaaaagagggattattcgtttgtccaggctactttgtaaaattt 14552388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 14850513 - 14850613
Alignment:
Q  91 tcgaattaagccaacaatggtatccttgttggttttcgaaaacctatttaacaattcaaaaagagggattattcgtttgtccaagctagattgtaaaatt 190  Q
    |||||||||||  | ||||||||||||| ||| |||| | |||||| |||| ||||||||||||||||||||||||||||| |||||| |||||||||||    
T  14850513 tcgaattaagcagagaatggtatccttgctggatttcaagaacctacttaataattcaaaaagagggattattcgtttgtctaagctatattgtaaaatt 14850612  T
Q  191 t 191  Q
    |    
T  14850613 t 14850613  T

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Target: chr2; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 14547338 - 14547191
Alignment:
Q  31 catcaaattgatattagcctctagaaggtgatagggataaaaagtaaacgatcttgaatgtcgaattaagccaacaatggtatccttgttggttttcgaa 130  Q
    ||||||||||||||||||  | | ||||||||||| || ||||||||   |  | |||||||||| ||||| || ||||  |||||||||||||||| |     
T  14547338 catcaaattgatattagcggcaacaaggtgataggaattaaaagtaacataagtcgaatgtcgaagtaagcaaagaatgacatccttgttggttttcaag 14547239  T
Q  131 aacctatttaacaattcaaaaagagggattattcgtttgtccaagcta 178  Q
    || ||| ||||||||| |||||||||||| |||||||| |||||||||    
T  14547238 aagctacttaacaattgaaaaagagggataattcgtttctccaagcta 14547191  T

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Target: chr2; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 91 - 190
Target Start/End: Complemental strand, 15019879 - 15019780
Alignment:
Q  91 tcgaattaagccaacaatggtatccttgttggttttcgaaaacctatttaacaattcaaaaagagggattattcgtttgtccaagctagattgtaaaatt 190  Q
    ||||||||||| ||||||| ||||||||||||||||| |  ||||| |||| |||||||||| ||||||||||||| | |||||||||  ||||||||||    
T  15019879 tcgaattaagcaaacaatgatatccttgttggttttcaagtacctacttaataattcaaaaaaagggattattcgtctctccaagctaccttgtaaaatt 15019780  T

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Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 14567534 - 14567444
Alignment:
Q  84 ttgaatgtcgaattaagccaacaatggtatccttgttggttttcgaaaacctatttaacaattcaaaaagagggattattcgtttgtccaa 174  Q
    ||||||| |||||||||| || |||| |||| |||||||||||| | ||| || ||||||||||||||||||||||||||||||| |||||    
T  14567534 ttgaatgccgaattaagcaaataatgatatctttgttggttttcaagaacttacttaacaattcaaaaagagggattattcgtttctccaa 14567444  T

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Target: chr2; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 14512461 - 14512377
Alignment:
Q  91 tcgaattaagccaacaatggtatccttgttggttttcgaaaacctatttaacaattcaaaaagagggattattcgtttgtccaag 175  Q
    ||||||||||| || |||| ||||||||||||||||| | |||||| |||| ||||||||||||||||||||| |||| ||||||    
T  14512461 tcgaattaagcaaagaatgatatccttgttggttttcaagaacctacttaataattcaaaaagagggattatttgtttctccaag 14512377  T

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Target: chr2; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 14528911 - 14528827
Alignment:
Q  91 tcgaattaagccaacaatggtatccttgttggttttcgaaaacctatttaacaattcaaaaagagggattattcgtttgtccaag 175  Q
    ||||||||||| || |||| ||||||||||||||||| | |||||| |||| ||||||||||||||||||||| |||| ||||||    
T  14528911 tcgaattaagcaaagaatgatatccttgttggttttcaagaacctacttaataattcaaaaagagggattatttgtttctccaag 14528827  T

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Target: chr2; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 14543137 - 14543053
Alignment:
Q  91 tcgaattaagccaacaatggtatccttgttggttttcgaaaacctatttaacaattcaaaaagagggattattcgtttgtccaag 175  Q
    ||||||||||| || |||| ||||||||||||||||| | |||||| |||| ||||||||||||||||||||| |||| ||||||    
T  14543137 tcgaattaagcaaagaatgatatccttgttggttttcaagaacctacttaataattcaaaaagagggattatttgtttctccaag 14543053  T

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Target: chr2; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 191
Target Start/End: Complemental strand, 15023973 - 15023814
Alignment:
Q  32 atcaaattgatattagcctctagaaggtgatagggataaaaagtaaacgatcttgaatgtcgaattaagccaacaatggtatccttgttggttttcgaaa 131  Q
    |||| ||||||| ||||| | | |||||||| ||||| |  ||||| | || | |||||| ||||||||| |||||| ||||||||||| |||||  | |    
T  15023973 atcagattgatactagccacaataaggtgatggggatgactagtaacccatttcgaatgttgaattaagcaaacaatagtatccttgttagttttaaaga 15023874  T
Q  132 acctatttaacaattcaaaaagagggattattcgtttgtccaagctagattgtaaaattt 191  Q
    ||||  ||| ||||| |||||||||||||||||| || || ||||||| |||||||||||    
T  15023873 accttgttagcaatttaaaaagagggattattcgattctcaaagctagtttgtaaaattt 15023814  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 14534135 - 14534052
Alignment:
Q  95 attaagccaacaatggtatccttgttggttttcgaaaacctatttaacaattcaaaaagagggattattcgtttgtccaagcta 178  Q
    ||||||| || ||||| |||| ||||||||||  |  ||||| |||| |||| |||||||||||||||| |||| |||||||||    
T  14534135 attaagcaaataatggcatccctgttggtttttaagcacctacttaataattgaaaaagagggattatttgtttctccaagcta 14534052  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 38524886 - 38524953
Alignment:
Q  93 gaattaagccaacaatggtatccttgttggttttcgaaaacctatttaacaattcaaaaagagggatt 160  Q
    ||||||||| || ||||| || ||| |||||||||  ||||||| ||||| |||||||||||||||||    
T  38524886 gaattaagcaaagaatggcattcttcttggttttcagaaacctacttaacgattcaaaaagagggatt 38524953  T

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