View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10505_low_5 (Length: 356)
Name: NF10505_low_5
Description: NF10505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10505_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 34649850 - 34649508
Alignment:
| Q |
1 |
aaatagatagcgcgattctgaaaaatattctctattcattcaatgcatgtttgtttgtctgtcnnnnnnnactaataaagtatgtttgttgttaaacact |
100 |
Q |
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| T |
34649850 |
aaatagatagcgcgactctgaaaaatgttctctattcattcaatgcatgtttgtttgtctgtctctttt-actaataaagtatgtttgttgttaaacact |
34649752 |
T |
|
| Q |
101 |
atcaaatgagtggtaggacattcactgtannnnnnnncttcttaatcctctagtttttaaggaaataagttgtattaatttagagttttgcctgaatcta |
200 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| | |
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| T |
34649751 |
atcaaatgagtggtaggacattcactgtattttttttcttcttaatcctctagtttttaaggaaagaagctgtattaatttagagttttgcctgaatcca |
34649652 |
T |
|
| Q |
201 |
gtagataataaatcggggtgattaggtttcgaacactaacctccatgaaagatctcttcatagacccatagctgtatttatttatttcatatagaaaatt |
300 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34649651 |
atagataataaatctggatgattaggtttcgaacactaacctccatgaaagatctcttcatagatccatagctgtatttatttatttcatatagaaaatt |
34649552 |
T |
|
| Q |
301 |
actaaaatacttttgatacaattttattttacacaccgtctctc |
344 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
34649551 |
actaaaatactcttgatacaattttattttacacaccatctctc |
34649508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 28467587 - 28467641
Alignment:
| Q |
289 |
atatagaaaattactaaaatacttttgatacaattttattttacacaccgtctct |
343 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||| | |||||| |
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|
| T |
28467587 |
atatagaaaattactaaaatactcttgatataattttattttacacgcagtctct |
28467641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 334
Target Start/End: Original strand, 24214058 - 24214103
Alignment:
| Q |
289 |
atatagaaaattactaaaatacttttgatacaattttattttacac |
334 |
Q |
| |
|
||||||||||||| ||||||| | |||||||||||||||||||||| |
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|
| T |
24214058 |
atatagaaaattattaaaatattcttgatacaattttattttacac |
24214103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 10965250 - 10965209
Alignment:
| Q |
290 |
tatagaaaattactaaaatacttttgatacaattttatttta |
331 |
Q |
| |
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|||||||||||| ||||||||| || |||||||||||||||| |
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| T |
10965250 |
tatagaaaattattaaaatactctttatacaattttatttta |
10965209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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