View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10505_low_6 (Length: 354)
Name: NF10505_low_6
Description: NF10505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10505_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 42313894 - 42313556
Alignment:
| Q |
1 |
aacacactttgtaggctgcaacatgagcttttggagaaccaccttttgcagtgccattaccatttccataaacacttactccttgaacgaaattaccacc |
100 |
Q |
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| T |
42313894 |
aacacactttgtaggctgcaacatgagcttttggagaaccaccttttgcagtgccattaccatttccataaacacttactccttgaacgaaattaccacc |
42313795 |
T |
|
| Q |
101 |
agctgttgatagagtgtgagaaccatggcctattgtgtcacgtgcagtgtaaaatgatgcatcaagtttgcctacatatgcctcataacctttgtagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42313794 |
agctgttgatagagtgtgagaaccatggcctattgtgtcacgtgcagtgtaaaatgatgcatcaagtttgcctacatatgcctcataacctttgtagaaa |
42313695 |
T |
|
| Q |
201 |
gctcttgctccaattagcttcctgcttgtggaacagttagaaagaattatggttggatgtgaaatatagcccggattttattggtatggagaatactccg |
300 |
Q |
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| T |
42313694 |
gctcttgctccaattagcttcctgcttgtggaacagttagaaagaattatggttggatgtgaaatatagcccggattttattggtatggagaatactccg |
42313595 |
T |
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| Q |
301 |
cacatctctctattaagtatgagactctccttgtctctg |
339 |
Q |
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| T |
42313594 |
cacatctctctattaagtatgagactctccttgtctctg |
42313556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 130
Target Start/End: Original strand, 31108828 - 31108871
Alignment:
| Q |
87 |
acgaaattaccaccagctgttgatagagtgtgagaaccatggcc |
130 |
Q |
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| T |
31108828 |
acgaaatttccaccagctgttgatagtgtgtgagtaccatggcc |
31108871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 24266844 - 24266787
Alignment:
| Q |
1 |
aacacactttgtaggctgcaacatgagcttttggagaaccaccttttgcagtgccatt |
58 |
Q |
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||||||||||||||||||||||||| | | |||| || |||||||| ||||| ||||| |
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| T |
24266844 |
aacacactttgtaggctgcaacatgtgatcttggtgatccacctttagcagtaccatt |
24266787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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