View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10506_high_3 (Length: 332)
Name: NF10506_high_3
Description: NF10506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10506_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 38341725 - 38341522
Alignment:
| Q |
20 |
aaaagctcaaggcagccgagaaaacaagcagttcgtgaaatgtctaaaaacccatttaacaaggctgttgaggttgatgatgtcctcgaccctccttatg |
119 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38341725 |
aaaacctcaaggcagccgagaaaacaagcagttcgtgaactgtctaaaaacccatttaacaaggctgttgaggttgatgatgtcctcgaccctccttatg |
38341626 |
T |
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| Q |
120 |
agtttgatggagatgtacttgaagaaaacgatgatgaggacgaagtggattattcattcaataagaaaagagcatcgacgagttcaaagaagaaatcagt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38341625 |
agtttgatggagatgtacttgaagaaaacgatgatgaggacgaagtggattattcattcaatatgaaaagagcatcgacgagttcaaagaagaaatcagt |
38341526 |
T |
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| Q |
220 |
ggct |
223 |
Q |
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|||| |
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| T |
38341525 |
ggct |
38341522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 38333929 - 38333769
Alignment:
| Q |
63 |
ctaaaaacccatttaacaaggctgttgaggttgatgatgtcctcgaccctccttatgagtttgatggagatgtacttgaagaaaacgatgatgaggacga |
162 |
Q |
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|||||||| |||| || |||||||| | | |||||||||||||||||||||||||| |||||||||||| |||||||||||| || ||||| ||||| |
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| T |
38333929 |
ctaaaaactcattgaatgaggctgttaacggtgatgatgtcctcgaccctccttatgttattgatggagatgaacttgaagaaaatgacgatgatgacga |
38333830 |
T |
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| Q |
163 |
agtggattattcattcaataagaaaagagcatcgacgagttcaaagaagaaatcagtggct |
223 |
Q |
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| T |
38333829 |
cgtggattattcatccaagaagacaagcgcatcaacaagttcaaagaagaaatcagtggct |
38333769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 257 - 318
Target Start/End: Complemental strand, 38341488 - 38341427
Alignment:
| Q |
257 |
ggctaatgatgatttagaaaagggtactgaagaacctcctaaaaagttcccgcattcatctc |
318 |
Q |
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| T |
38341488 |
ggctaatgatgatttagaaaagggtactgaagaacctcctaaaaagttcccgcattcatctc |
38341427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 257 - 318
Target Start/End: Complemental strand, 38333736 - 38333675
Alignment:
| Q |
257 |
ggctaatgatgatttagaaaagggtactgaagaacctcctaaaaagttcccgcattcatctc |
318 |
Q |
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| T |
38333736 |
ggctaatgatgattcagaaaaggttactgaagaacctcctaaaaagttcccccatgcatctc |
38333675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 25379342 - 25379419
Alignment:
| Q |
138 |
ttgaagaaaacgatgatgaggacgaagtggattattcattcaataagaaaagagcatcgacgagttcaaagaagaaat |
215 |
Q |
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|||||||||| ||||| ||||||||||||||| |||||| || ||||||||||||| || | |||||| ||||||| |
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| T |
25379342 |
ttgaagaaaatgatgacgaggacgaagtggataattcatctaagaagaaaagagcattaacaaattcaaaaaagaaat |
25379419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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