View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10506_high_6 (Length: 245)
Name: NF10506_high_6
Description: NF10506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10506_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 9020060 - 9020272
Alignment:
| Q |
11 |
cagagaaagaacctttgttttgggaatagcttcaatctcatcgcgaaaccggtccttaatcgattgaacttgaagctccatagcactcacagcagcatca |
110 |
Q |
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| T |
9020060 |
cagagaaataaccttggttttgggaatagcttcaatctcatcgcgaaaccgatccttaatcgattgcacttgaagctccatagcactcacagcagcatca |
9020159 |
T |
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| Q |
111 |
acagctgaaagatctgcaatactactggctgggtacactacaacaacacatacgcagattcatctaaattaacaaatcaagtaaataataaagacccaat |
210 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9020160 |
acagccgaaagatctgcaatactactcgctgggtacactacaacaacacatatgcaaattcatctaaattaacaaatcaagtaaagaataaagacccaat |
9020259 |
T |
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| Q |
211 |
ttggtcctcacaa |
223 |
Q |
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||| ||||||||| |
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| T |
9020260 |
ttgatcctcacaa |
9020272 |
T |
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