View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10506_high_9 (Length: 229)
Name: NF10506_high_9
Description: NF10506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10506_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 40429576 - 40429369
Alignment:
| Q |
7 |
catattccaatagtttatgactctatcgtgatcaaggtgaatccagac-----------ttctaacgtaatgacacgaaggacgtgacaaaggtgttaca |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||| || |||||||||||||||||||| ||||||||| |
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| T |
40429576 |
catattccaatagtttatgactctatcgtgatcaaggtgaatccagccagacttctaagttctaacatagtgacacgaaggacgtgacaatggtgttaca |
40429477 |
T |
|
| Q |
96 |
gtactggattgtcgtttatgggatggggagttggcgagccttgtttcgggtccatgcaagggcaagtgaactagacaattttggacaaaccccaaaacaa |
195 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40429476 |
gtactggattgtcgtttatgggatggggaattggcgtgccttgtttcgggtccatgcaagggcaagtgaactagacaattttggacaaaccccaaaacaa |
40429377 |
T |
|
| Q |
196 |
ttttatat |
203 |
Q |
| |
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|||||||| |
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| T |
40429376 |
ttttatat |
40429369 |
T |
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