View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10506_low_1 (Length: 479)
Name: NF10506_low_1
Description: NF10506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10506_low_1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 2687666 - 2687188
Alignment:
| Q |
1 |
gttatactaaaagtggctgattaaaattaagaagatgaagagagttgatgacaattgaactagtttgagttaagagataaagagttggaagtcatgattt |
100 |
Q |
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| T |
2687666 |
gttatactaaaagtgactgattaaaattaagaagatgaagagagttgatgacaattaaactagtttgagttaagagataaagagttggaagtcatgattt |
2687567 |
T |
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| Q |
101 |
aaatttaaacnnnnnnnnnnnnttaatctaacaactaactactatatagacaaaatgacaatagtcattgaaaattcacatacacaaataaaaaagttgt |
200 |
Q |
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| T |
2687566 |
aaatttaaacaaaaaagaaaaattaatctaacaactaactactatatagacaaaatgataatagtcattgaaaattcacatacacaaataaaaaagttgt |
2687467 |
T |
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| Q |
201 |
agtttaaatttcaatcaacttaacatttttgtcaattaagataggacttatgcacatatcaagattttataatcgatggtacacatagggcttgaaagtt |
300 |
Q |
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| T |
2687466 |
agtttaaatttcaatcaatttaacatttttgtcaattaagataggacttatacacatatcaagattttataatcgatggtacacatagggcttgaaagtt |
2687367 |
T |
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| Q |
301 |
gaaagattccaaaaattattaataaacaaacacatataaagctatctccgattctccatcttaaaacgaattcagctcagtagcaacactctctaaacac |
400 |
Q |
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| T |
2687366 |
gaaagattccaaaaattattaataaacaaacacatataaagctatctccgattctccatcttaaaacgaattcagctcagtagcaacactctctaaacac |
2687267 |
T |
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| Q |
401 |
aggatcaatgttgtttccccacttcttgttgtacatctccaaaagcttataagctggtgtcatacctgcatgaccatat |
479 |
Q |
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| T |
2687266 |
aggatcaatgttgcttccccacttcttgttgtacatctccaaaagcttatcagctggtgtcatacctgcatgaccatat |
2687188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 377 - 468
Target Start/End: Complemental strand, 2694308 - 2694217
Alignment:
| Q |
377 |
tcagtagcaacactctctaaacacaggatcaatgttgtttccccacttcttgttgtacatctccaaaagcttataagctggtgtcatacctg |
468 |
Q |
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| T |
2694308 |
tcagtagcaacactctctaaacacagaatctatgttgcttccccacttgttattgtacatctccaaaagcttttcagccggtgtcatacctg |
2694217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 37146321 - 37146268
Alignment:
| Q |
146 |
atagacaaaatgacaatagtcattgaaaattcacatacacaaataaaaaagttg |
199 |
Q |
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| T |
37146321 |
atagacaaaatgacaatagtaattgaaaattcacttacataagtgaaaaagttg |
37146268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 174
Target Start/End: Original strand, 10828513 - 10828541
Alignment:
| Q |
146 |
atagacaaaatgacaatagtcattgaaaa |
174 |
Q |
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| T |
10828513 |
atagacaaaatgacaatagtcattgaaaa |
10828541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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