View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10506_low_10 (Length: 249)
Name: NF10506_low_10
Description: NF10506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10506_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 30 - 233
Target Start/End: Complemental strand, 3308002 - 3307798
Alignment:
| Q |
30 |
ttgagtttgtttgaaaagcaccgaagaagatggaattaacatttatttaagtaatatgttaatagatctcattcgggagctctattcacatttgaatgtt |
129 |
Q |
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| T |
3308002 |
ttgagtttgtttgaaaagtatcgaagaagatggaattaacatttatttaagtaatatgttaatagatctccttcgggagctctattcacatttgaatgtt |
3307903 |
T |
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| Q |
130 |
atgctacttatttataattagtctacatctctat-gtccgagaacatctgatttgggacttactttctcttgttgacaaacctcgtgccatactttggtg |
228 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3307902 |
atgctacttatttataattagtctgcatctctatggtccgagaacatctgatttgggacttactttctcttgttgacaaacctcctgccatactttggtg |
3307803 |
T |
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| Q |
229 |
ctgca |
233 |
Q |
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||||| |
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| T |
3307802 |
ctgca |
3307798 |
T |
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