View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10506_low_16 (Length: 233)

Name: NF10506_low_16
Description: NF10506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10506_low_16
NF10506_low_16
[»] chr8 (8 HSPs)
chr8 (8-211)||(35355143-35355346)
chr8 (127-194)||(31711495-31711561)
chr8 (156-202)||(3093974-3094020)
chr8 (154-203)||(38501509-38501558)
chr8 (127-194)||(4586758-4586825)
chr8 (127-194)||(7680836-7680903)
chr8 (156-194)||(33590129-33590167)
chr8 (155-192)||(14532452-14532489)
[»] chr7 (6 HSPs)
chr7 (127-196)||(8062899-8062968)
chr7 (120-194)||(38838677-38838751)
chr7 (120-151)||(10228533-10228564)
chr7 (120-206)||(39608600-39608686)
chr7 (155-204)||(46720038-46720087)
chr7 (156-192)||(25688992-25689028)
[»] chr4 (10 HSPs)
chr4 (127-196)||(35255492-35255561)
chr4 (127-194)||(51151051-51151119)
chr4 (120-191)||(32933966-32934036)
chr4 (140-191)||(46805050-46805101)
chr4 (120-191)||(56095235-56095306)
chr4 (156-194)||(1758497-1758535)
chr4 (119-192)||(7010471-7010544)
chr4 (125-206)||(37687255-37687336)
chr4 (158-194)||(46216980-46217016)
chr4 (160-192)||(47097342-47097374)
[»] chr1 (5 HSPs)
chr1 (116-194)||(35621592-35621670)
chr1 (125-194)||(5529612-5529681)
chr1 (156-193)||(9890730-9890767)
chr1 (168-204)||(8234336-8234372)
chr1 (160-204)||(29795281-29795325)
[»] chr2 (7 HSPs)
chr2 (138-194)||(7165777-7165833)
chr2 (127-194)||(4877155-4877221)
chr2 (138-204)||(34883917-34883983)
chr2 (155-204)||(6686772-6686821)
chr2 (120-173)||(20167644-20167697)
chr2 (160-193)||(20966057-20966090)
chr2 (120-204)||(13478791-13478875)
[»] chr5 (7 HSPs)
chr5 (120-191)||(22391694-22391765)
chr5 (157-204)||(19342537-19342584)
chr5 (155-194)||(27001417-27001456)
chr5 (120-194)||(16127051-16127125)
chr5 (155-204)||(37181088-37181136)
chr5 (158-202)||(6645701-6645745)
chr5 (156-188)||(31949317-31949349)
[»] chr3 (2 HSPs)
chr3 (160-196)||(4136549-4136585)
chr3 (156-204)||(31186677-31186725)
[»] chr6 (2 HSPs)
chr6 (160-206)||(12291650-12291696)
chr6 (154-202)||(17848681-17848729)


Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 35355143 - 35355346
Alignment:
Q  8 gagaagcagagaacaacaataaaataaatactaaggtttttgtagtgtctcgtgagagtgaaggtaacttgtgtaaaggtataaagaaaccattaatcaa 107  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  35355143 gagaagaacagaacaacaataaaataaatactaaggtttttgtagtgtctcgtgagagtgaaggtaacttgtgtaaagttataaagaaaccattaattaa 35355242  T
Q  108 taagtcgaagagaataatcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagtatttaattgtacg 207  Q
    |||||||||||||||||||||||| || ||| ||||||||||  ||||||| |||||||||||||| |||| |||||||||||||||||||||||||| |    
T  35355243 taagtcgaagagaataatcattttagtatttgaatgtgtaacagcatgtcataatagtctctcaatgtattgaaattttaaaatagtatttaattgtatg 35355342  T
Q  208 atct 211  Q
    ||||    
T  35355343 atct 35355346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 31711561 - 31711495
Alignment:
Q  127 attttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagt 194  Q
    |||||||||||||||||| ||||||  |||||||||||||| | ||| || |||||||||||||||||    
T  31711561 attttggtctttaaatgtataacgagttgtcacaatagtctattaatcta-taaaattttaaaatagt 31711495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 3094020 - 3093974
Alignment:
Q  156 tcacaatagtctctcaatatattaaaattttaaaatagtatttaatt 202  Q
    |||||||||||| ||||||||| |||||||||||||||| |||||||    
T  3094020 tcacaatagtctttcaatatatcaaaattttaaaatagtctttaatt 3093974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 38501558 - 38501509
Alignment:
Q  154 tgtcacaatagtctctcaatatattaaaattttaaaatagtatttaattg 203  Q
    |||||||||||||| ||||||||  |||||| ||||||||||||||||||    
T  38501558 tgtcacaatagtctttcaatataacaaaattataaaatagtatttaattg 38501509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 4586758 - 4586825
Alignment:
Q  127 attttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagt 194  Q
    |||||| || || ||||||||||||   || |||||||||||| ||| ||||||||||||||||||||    
T  4586758 attttgatccttgaatgtgtaacgagtagttacaatagtctcttaatgtattaaaattttaaaatagt 4586825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 7680836 - 7680903
Alignment:
Q  127 attttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagt 194  Q
    |||||||||  ||||||| ||||||    |||||||| ||||||||||||||||||||| ||||||||    
T  7680836 attttggtccataaatgtctaacgagtaatcacaatactctctcaatatattaaaatttaaaaatagt 7680903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 33590129 - 33590167
Alignment:
Q  156 tcacaatagtctctcaatatattaaaattttaaaatagt 194  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  33590129 tcacaatagtctctcaatgtattaaaattgtaaaatagt 33590167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 14532489 - 14532452
Alignment:
Q  155 gtcacaatagtctctcaatatattaaaattttaaaata 192  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  14532489 gtcacaatagtctcttaatatatcaaaattttaaaata 14532452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 8062968 - 8062899
Alignment:
Q  127 attttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagtat 196  Q
    ||||||||| || ||||||||||||   ||||||||||||| ||||| ||||||||||||||||||||||    
T  8062968 attttggtccttgaatgtgtaacgagtagtcacaatagtctgtcaatgtattaaaattttaaaatagtat 8062899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 38838751 - 38838677
Alignment:
Q  120 aataatcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagt 194  Q
    |||||| |||||||||  | ||||||||||||   ||||||||| ||| ||||| ||||||||||||||||||||    
T  38838751 aataattattttggtccctgaatgtgtaacgagtagtcacaatattctatcaatgtattaaaattttaaaatagt 38838677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 151
Target Start/End: Original strand, 10228533 - 10228564
Alignment:
Q  120 aataatcattttggtctttaaatgtgtaacga 151  Q
    ||||||||||||||||||||||||||||||||    
T  10228533 aataatcattttggtctttaaatgtgtaacga 10228564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 206
Target Start/End: Complemental strand, 39608686 - 39608600
Alignment:
Q  120 aataatcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagtatttaattgtac 206  Q
    |||||||||||| ||| || ||||||||| ||   || |||||||| | ||||| ||| |||||||||||||||| || ||||||||    
T  39608686 aataatcattttagtccttgaatgtgtaaggagtagttacaatagtttttcaatgtatcaaaattttaaaatagttttgaattgtac 39608600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 46720087 - 46720038
Alignment:
Q  155 gtcacaatagtctctcaatatattaaaattttaaaatagtatttaattgt 204  Q
    |||||||||||| |||||| |||| |||||||||||| |||||| |||||    
T  46720087 gtcacaatagtccctcaatgtattgaaattttaaaatggtatttgattgt 46720038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 25688992 - 25689028
Alignment:
Q  156 tcacaatagtctctcaatatattaaaattttaaaata 192  Q
    |||||||||||||||||| |||||||||| |||||||    
T  25688992 tcacaatagtctctcaatgtattaaaattctaaaata 25689028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 35255561 - 35255492
Alignment:
Q  127 attttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagtat 196  Q
    |||||||||  ||||| ||||||||   ||||||||||||||||||| ||||||||||||||||||||||    
T  35255561 attttggtccctaaatatgtaacgagtagtcacaatagtctctcaatgtattaaaattttaaaatagtat 35255492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 51151119 - 51151051
Alignment:
Q  127 attttggtctttaaatgtgtaacgacatgtcacaatag-tctctcaatatattaaaattttaaaatagt 194  Q
    ||||||||| || ||||||||||||   |||||||||  ||||||||| ||||||||||||||||||||    
T  51151119 attttggtccttgaatgtgtaacgagtagtcacaataaatctctcaatgtattaaaattttaaaatagt 51151051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 32933966 - 32934036
Alignment:
Q  120 aataatcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaat 191  Q
    |||||| |||||||||| | ||||||||| ||   |||| |||| |||||||||||||||||||||||||||    
T  32933966 aataattattttggtctctgaatgtgtaatgagtagtcataata-tctctcaatatattaaaattttaaaat 32934036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 46805101 - 46805050
Alignment:
Q  140 aatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaat 191  Q
    ||||||||||||   |||| |||||||| |||||||||||||||||||||||    
T  46805101 aatgtgtaacgagtagtcataatagtctttcaatatattaaaattttaaaat 46805050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 56095306 - 56095235
Alignment:
Q  120 aataatcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaat 191  Q
    |||||| |||||||||  | ||||||||||||   ||||||||||| ||||| | |||||||||||||||||    
T  56095306 aataattattttggtcccttaatgtgtaacgagtagtcacaatagtatctcattgtattaaaattttaaaat 56095235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 1758535 - 1758497
Alignment:
Q  156 tcacaatagtctctcaatatattaaaattttaaaatagt 194  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  1758535 tcacaatagtctctcaatgtattaaaattttaagatagt 1758497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 7010544 - 7010471
Alignment:
Q  119 gaataatcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatatta-aaattttaaaata 192  Q
    ||||||| ||||| ||| ||||||||||||| | || |||||||||||||||||| ||| | |||||||||||||    
T  7010544 gaataattattttcgtccttaaatgtgtaac-aaatatcacaatagtctctcaatgtatcagaaattttaaaata 7010471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 206
Target Start/End: Complemental strand, 37687336 - 37687255
Alignment:
Q  125 tcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagtatttaattgtac 206  Q
    |||||||||||| | ||||| ||| ||   || |||||| | ||||||||||| |||||||||||||||| ||| |||||||    
T  37687336 tcattttggtctctgaatgtataatgattagttacaataatttctcaatatatcaaaattttaaaatagtttttgattgtac 37687255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 46216980 - 46217016
Alignment:
Q  158 acaatagtctctcaatatattaaaattttaaaatagt 194  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  46216980 acaatagtctctcaatgtatcaaaattttaaaatagt 46217016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 47097342 - 47097374
Alignment:
Q  160 aatagtctctcaatatattaaaattttaaaata 192  Q
    |||||||||||||| ||||||||||||||||||    
T  47097342 aatagtctctcaatgtattaaaattttaaaata 47097374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 35621670 - 35621592
Alignment:
Q  116 agagaataatcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagt 194  Q
    |||||||| |||||||| || |||||||||||||||  |||||||||||| | | ||| ||||||| ||||||||||||    
T  35621670 agagaatagtcattttgatccttaaatgtgtaacgagttgtcacaatagtttttaaatgtattaaatttttaaaatagt 35621592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 5529612 - 5529681
Alignment:
Q  125 tcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagt 194  Q
    |||||||| ||||| ||||||||| ||  ||||||| |||||  ||||||||| ||| ||||||||||||    
T  5529612 tcattttgctctttgaatgtgtaaggagttgtcacagtagtccttcaatatatcaaagttttaaaatagt 5529681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 9890767 - 9890730
Alignment:
Q  156 tcacaatagtctctcaatatattaaaattttaaaatag 193  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  9890767 tcacaatagtctctcaatgtattaaaattctaaaatag 9890730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 8234372 - 8234336
Alignment:
Q  168 ctcaatatattaaaattttaaaatagtatttaattgt 204  Q
    |||||||||| |||||||||||||||| |||||||||    
T  8234372 ctcaatatatcaaaattttaaaatagtttttaattgt 8234336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 29795325 - 29795281
Alignment:
Q  160 aatagtctctcaatatattaaaattttaaaatagtatttaattgt 204  Q
    |||||||| | ||||||| |||||||||||||||||||| |||||    
T  29795325 aatagtcttttaatatatcaaaattttaaaatagtatttgattgt 29795281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 7165833 - 7165777
Alignment:
Q  138 taaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagt 194  Q
    ||||||||||||||   ||||||||||||| ||||| ||||||||||||||||||||    
T  7165833 taaatgtgtaacgagtagtcacaatagtctttcaatgtattaaaattttaaaatagt 7165777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 4877221 - 4877155
Alignment:
Q  127 attttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagt 194  Q
    |||||||||||||||||| ||||||  |||||||||||||| | ||| || |||||||||||||||||    
T  4877221 attttggtctttaaatgtataacgagttgtcacaatagtctattaatcta-taaaattttaaaatagt 4877155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 34883917 - 34883983
Alignment:
Q  138 taaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagtatttaattgt 204  Q
    ||||||||||| | |  |||||||||||| |||||| ||| |||||||||||||||| | |||||||    
T  34883917 taaatgtgtaatggccggtcacaatagtccctcaatgtatcaaaattttaaaatagtctctaattgt 34883983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 6686772 - 6686821
Alignment:
Q  155 gtcacaatagtctctcaatatattaaaattttaaaatagtatttaattgt 204  Q
    |||| |||||| ||||||||||| |||||||||||||||| ||| |||||    
T  6686772 gtcaaaatagtttctcaatatatcaaaattttaaaatagtttttgattgt 6686821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 20167697 - 20167644
Alignment:
Q  120 aataatcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaat 173  Q
    |||| ||||||||||||||||||||||||| |   |||||||||||| ||||||    
T  20167697 aatagtcattttggtctttaaatgtgtaacaagtagtcacaatagtcactcaat 20167644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 20966057 - 20966090
Alignment:
Q  160 aatagtctctcaatatattaaaattttaaaatag 193  Q
    |||||||||||||| |||||||||||||||||||    
T  20966057 aatagtctctcaatctattaaaattttaaaatag 20966090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 13478875 - 13478791
Alignment:
Q  120 aataatcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagtatttaattgt 204  Q
    ||||||||||||  ||||||||| ||||| ||   || |||||| ||| | ||||||| |||||||||||||||| ||| |||||    
T  13478875 aataatcattttaatctttaaatatgtaatgaatagtaacaataatctttgaatatatcaaaattttaaaatagtttttgattgt 13478791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 22391694 - 22391765
Alignment:
Q  120 aataatcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaat 191  Q
    ||||||||| ||| || |||||||||||||||   |||| |||||||| ||||||||| |||||||||||||    
T  22391694 aataatcatattgatccttaaatgtgtaacgaatagtcataatagtctttcaatatatcaaaattttaaaat 22391765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 19342584 - 19342537
Alignment:
Q  157 cacaatagtctctcaatatattaaaattttaaaatagtatttaattgt 204  Q
    ||||||| ||| |||||||||||||||||||||||||| ||| |||||    
T  19342584 cacaataatctatcaatatattaaaattttaaaatagtttttgattgt 19342537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 27001456 - 27001417
Alignment:
Q  155 gtcacaatagtctctcaatatattaaaattttaaaatagt 194  Q
    |||||||||||||||| |||||| ||||||||||||||||    
T  27001456 gtcacaatagtctctcgatatatcaaaattttaaaatagt 27001417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 16127051 - 16127125
Alignment:
Q  120 aataatcattttggtctttaaatgtgtaacgacatgtcacaatagtctctcaatatattaaaattttaaaatagt 194  Q
    |||| |||||||||||  ||||||||||| ||   ||||||||||||||||||  ||| ||||||| ||||||||    
T  16127051 aatagtcattttggtccctaaatgtgtaaggagtagtcacaatagtctctcaaagtatcaaaatttcaaaatagt 16127125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 37181088 - 37181136
Alignment:
Q  155 gtcacaatagtctctcaatatattaaaattttaaaatagtatttaattgt 204  Q
    |||| |||||||||| |||||||||||||||||||| ||| |||||||||    
T  37181088 gtcataatagtctcttaatatattaaaattttaaaa-agtctttaattgt 37181136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 6645701 - 6645745
Alignment:
Q  158 acaatagtctctcaatatattaaaattttaaaatagtatttaatt 202  Q
    |||||||||| ||||| ||| |||||||||||||||| |||||||    
T  6645701 acaatagtctatcaatgtatcaaaattttaaaatagtctttaatt 6645745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Complemental strand, 31949349 - 31949317
Alignment:
Q  156 tcacaatagtctctcaatatattaaaattttaa 188  Q
    |||||||||||||| ||||||||||||||||||    
T  31949349 tcacaatagtctcttaatatattaaaattttaa 31949317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 4136549 - 4136585
Alignment:
Q  160 aatagtctctcaatatattaaaattttaaaatagtat 196  Q
    |||||||| ||||||||||||||||||||||||||||    
T  4136549 aatagtctttcaatatattaaaattttaaaatagtat 4136585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 31186725 - 31186677
Alignment:
Q  156 tcacaatagtctctcaatatattaaaattttaaaatagtatttaattgt 204  Q
    ||||||||||||||  |||||| |||||||||||||||| ||| |||||    
T  31186725 tcacaatagtctcttgatatatcaaaattttaaaatagtttttgattgt 31186677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 12291696 - 12291650
Alignment:
Q  160 aatagtctctcaatatattaaaattttaaaatagtatttaattgtac 206  Q
    ||||||| |||||| |||||||||||||||||||| ||| |||||||    
T  12291696 aatagtccctcaatgtattaaaattttaaaatagtctttgattgtac 12291650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 17848681 - 17848729
Alignment:
Q  154 tgtcacaatagtctctcaatatattaaaattttaaaatagtatttaatt 202  Q
    |||||| ||||||||| ||| ||||||||||||||| |||| |||||||    
T  17848681 tgtcacgatagtctctaaatgtattaaaattttaaattagtttttaatt 17848729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University