View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10506_low_19 (Length: 228)
Name: NF10506_low_19
Description: NF10506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10506_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 4826600 - 4826397
Alignment:
| Q |
19 |
cattgatattctatatttgggtggttgatgcatcattttttattccatattgcggtaacatttcaaaaggttggaatgaaaaaggttgatataacaaaaa |
118 |
Q |
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| T |
4826600 |
cattgatattctatatttgggtggttgatgcatcattttttattccatattgcggtaacatttcaaaaggttcgaatgaaaaaggttgatataacaaaaa |
4826501 |
T |
|
| Q |
119 |
gaactgtgaaggaaggacataagtatttaatattatcaatgctttatgctttgtatcctagatagggacatttttcctttatattccaaatcataccaga |
218 |
Q |
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| T |
4826500 |
gaactgtgaaggaaggacataagtatttaatattatcaatgctttatgctttgtatcctagatagggacatttttcctttatattccaaatcataccaga |
4826401 |
T |
|
| Q |
219 |
aatg |
222 |
Q |
| |
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|||| |
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| T |
4826400 |
aatg |
4826397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 38728192 - 38727985
Alignment:
| Q |
1 |
ctgacgagtttgacaaaacattgatattctatatttgggtggttgatgcatcattttttatt-ccatattgcggtaacatttcaaaaggttggaatgaaa |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38728192 |
ctgacgagtttgacaaaacattgatattctatatttgggtggttgatgcatcattttttatttccatattgcggtaacatttcaaaaggttg-------- |
38728101 |
T |
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| Q |
100 |
aaggttgatataacaaaaagaactgtgaaggaaggacataagtatttaatattatcaatgctttatgctttgtatcctagatagggacatttttccttta |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38728100 |
-------atataacaaaaagaactgtgaaggaaggacataagtatttaatattatcaatgctttatgctttgtatcctagatagggacatttttccttta |
38728008 |
T |
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| Q |
200 |
tattccaaatcataccagaaatg |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
38728007 |
tattccaaatcataccagaaatg |
38727985 |
T |
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