View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10506_low_2 (Length: 461)
Name: NF10506_low_2
Description: NF10506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10506_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 448
Target Start/End: Complemental strand, 2008632 - 2008193
Alignment:
| Q |
16 |
aatgtgtcagtgtttcatagatacttgcctatataaatttgatagttacaatcttatgttaaagttttcattgctagcagctatattgagatggatgatt |
115 |
Q |
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| T |
2008632 |
aatgtgtcagtgtttcatagatacttgcctatataaatttgatagttacaatcttatgttaaagttttcattgctagcagctatattgagatggatgatt |
2008533 |
T |
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| Q |
116 |
acaaaatgctgagctcagagaaactgcaaagtttgggttggaaattcaggccattggaggaaacactcattgactctgttgagagctataaggaggctgg |
215 |
Q |
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| T |
2008532 |
acaaaatgctgagctcagagaaactgcaaagtttgggttggaaactcaggccattggaggaaacactcattgactctgttgagagctataaggaggctgg |
2008433 |
T |
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| Q |
216 |
actacttcaatcagcataattttagttctcctaaaacctaaataaatgtgactacttgtttagcatctccatattagaatggatttgtgaacgtctttca |
315 |
Q |
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| T |
2008432 |
actacttcaatcacaataactttagttctcctaaaacctaaataaatgtgactacttgtttagcatctccatattggaatggatttgtgaatgtctttca |
2008333 |
T |
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| Q |
316 |
gtttatgtactttcttttgtttctcaaaccaatta-------atgagtgcttttaaatttacaatgtgttactaaatattgcacttgtcaatgcttgtaa |
408 |
Q |
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| T |
2008332 |
gtttatgtattttcttctacttcagaaaccaattaatgactaatgagtgcttttaaatttacaatgtgttaataaatattgcacttgtcaatgcttgtaa |
2008233 |
T |
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| Q |
409 |
cttgatcacatcaatttttatgctaacaaaatgttcctat |
448 |
Q |
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| T |
2008232 |
cttgattacatcaatttttatgctaacaaaatgttcctat |
2008193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 52 - 414
Target Start/End: Original strand, 1741746 - 1742108
Alignment:
| Q |
52 |
atttgatagttacaatcttatgttaaagttttcattgctagcagctatattgagatggatgattacaaaatgctgagctcagagaaactgcaaagtttgg |
151 |
Q |
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||||||| ||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1741746 |
atttgatggttacaaacttatgttaaagttttcatttgtggcagctatattgagatggatgattacaaaatgctgagctcagagaaactgcaaagtttgg |
1741845 |
T |
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| Q |
152 |
gttggaaattcaggccattggaggaaacactcattgactctgttgagagctataaggaggctggactacttcaatcagcataattttagttctcctaaaa |
251 |
Q |
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| T |
1741846 |
gttggaaattcaggccattggaggaaacactcattgactctgttgagagctataaggaggctggactacttcaatcagcataattttagttctcctaaaa |
1741945 |
T |
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| Q |
252 |
cctaaataaatgtgactacttgtttagcatctccatattagaatggatttgtgaacgtctttcagtttatgtactttcttttgtttctcaaaccaattaa |
351 |
Q |
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| T |
1741946 |
cctaaataaatgtgactacttgtttagcatctccatattagaatggatttgtgagcgtctttcagtttatgtattttcttttgtttctcaaaccaattaa |
1742045 |
T |
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| Q |
352 |
tgagtgcttttaaatttacaatgtgttactaaatattgcacttgtcaatgcttgtaacttgat |
414 |
Q |
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| T |
1742046 |
tgagtgcttttaaatttacaatgtgttactaaatattgcacttgtcaatgcttcaaacttgat |
1742108 |
T |
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