View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10506_low_3 (Length: 359)
Name: NF10506_low_3
Description: NF10506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10506_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 43689811 - 43689480
Alignment:
| Q |
16 |
cacaatataatcacaattgaggttgcatcggccacatttgatcacaattctctacaatataaaaattgcaatctgactacaatttaaaacccggatctcc |
115 |
Q |
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| T |
43689811 |
cacaatataatcacaattgaggttgcatcggccaaattttatcacaattctctacaatataaaaattgcaatctgactacaatttaaaacccggatatcc |
43689712 |
T |
|
| Q |
116 |
cttttctcaactgatgaatcaaaagcaaatgaaatgacaataaggnnnnnnnnnnnnntcaataaaagcacttacatgagaatattaaggggcaattcta |
215 |
Q |
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| T |
43689711 |
cttttctcaactgatgaatcaaaagcaaatgaaatgacaataaggaagaaaaaaaa--tcaataaaagcacttacatgagaatattaaggggcaattcta |
43689614 |
T |
|
| Q |
216 |
aagctaaaaactccgaacaaaatctttgtacagaagcaagagagctaagatcaatctccaatagaataacctcagcataaggactctcctcttgaatttt |
315 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43689613 |
aagctaaaaactctgaacaaaatctttgtacagaagcaagagagctaagatcaatctccaatagaataacctcagcataaggactctcctcttggatttt |
43689514 |
T |
|
| Q |
316 |
ttctttcactttcatagcctttttcatgtctctg |
349 |
Q |
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| T |
43689513 |
ttctttcactttcatagcctttttcatgtctctg |
43689480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 185 - 341
Target Start/End: Complemental strand, 34748132 - 34747976
Alignment:
| Q |
185 |
acttacatgagaatattaaggggcaattctaaagctaaaaactccgaacaaaatctttgtacagaagcaagagagctaagatcaatctccaatagaataa |
284 |
Q |
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| T |
34748132 |
acttacattagaatattaagtggaagatctaaagctaaaaaatcagaacaaaatctttgtacagaacaaaaagagctaagatcaatctccaacagaataa |
34748033 |
T |
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| Q |
285 |
cctcagcataaggactctcctcttgaattttttctttcactttcatagcctttttca |
341 |
Q |
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| T |
34748032 |
cctcagcatttggactctctttttgtatattgtctctcactttcattgccttcttca |
34747976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 185 - 303
Target Start/End: Original strand, 7970715 - 7970833
Alignment:
| Q |
185 |
acttacatgagaatattaaggggcaattctaaagctaaaaactccgaacaaaatctttgtacagaagcaagagagctaagatcaatctccaatagaataa |
284 |
Q |
| |
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|||||||| ||||||||||| || | |||||||||||||| || ||||||||||||| |||||||| || ||||||||| |||| ||||| ||||||| |
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| T |
7970715 |
acttacattagaatattaagcggaagatctaaagctaaaaaatcagaacaaaatctttatacagaagaaaaggagctaagaccaatttccaacagaataa |
7970814 |
T |
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| Q |
285 |
cctcagcataaggactctc |
303 |
Q |
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| T |
7970815 |
cctcagcatttggactctc |
7970833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 10775976 - 10775931
Alignment:
| Q |
31 |
attgaggttgcatcggccacatttgatcacaattctctacaatata |
76 |
Q |
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||||| || ||||||||| |||||||||||| |||||||||||||| |
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| T |
10775976 |
attgatgtggcatcggccgcatttgatcacagttctctacaatata |
10775931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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