View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10506_low_5 (Length: 324)
Name: NF10506_low_5
Description: NF10506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10506_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 36667067 - 36666773
Alignment:
| Q |
17 |
acattaacctggaaccttaaggttttggatgaagatgcggcatctaaacttacttgtgtggttgctcttagtccaatgtgttgatccaactcagtgatgc |
116 |
Q |
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| T |
36667067 |
acattaacctggaaccttaaggttttggatgaagatgcggtgtctaaacttacttatgtggttgctcttagtccaatgtgttgatccaactcagtgatgc |
36666968 |
T |
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| Q |
117 |
tcacgtcattgcccaacattgatattagagcccggttagatttgatgggggagcaggagagatacctgatattggatcatgaatctggagagtcttacat |
216 |
Q |
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| T |
36666967 |
tcacatcattgcccaacagtggtattagagcccggttagatttgatgggggagcaggagagatacctgatgttggaccacgaacctggagagtcttaca- |
36666869 |
T |
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| Q |
217 |
ttgaggagagatgttgtgatatattaagtgtgagtttaaagtctcacattgagtaaatttaagtcgctgtcaaggcttttagatttattgttgcct |
312 |
Q |
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| T |
36666868 |
ttgaggagagatgttgtgatatattaagtgtgagtttaaagtctcacatcgaataaatttaagccgctgtcaaggcttttatatttattgttgcct |
36666773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 11442937 - 11443024
Alignment:
| Q |
31 |
ccttaaggttttggatgaagatgcggcatctaaacttacttgtgtggttgctcttagtccaatgtgttgatccaactcagtgatgctc |
118 |
Q |
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| T |
11442937 |
ccttaaggttttgggtgaatatgtggtgtccaatctcacttgtgtggttgctcttagcccaatgtgacgattcaacccagtgaggctc |
11443024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 2041165 - 2041250
Alignment:
| Q |
31 |
ccttaaggttttggatgaagatgcggcatctaaacttacttgtgtggttgctcttagtccaatgtgttgatccaactcagtgatgctc |
118 |
Q |
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| T |
2041165 |
ccttaaggttttgggtgaagatgtggtgtccaa-ctcacttgtgtggttgctcttag-ccaatatgttgatccaacccagtgaggctc |
2041250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 2652257 - 2652307
Alignment:
| Q |
34 |
taaggttttggatgaagatgcggcatctaaacttacttgtgtggttgctct |
84 |
Q |
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| T |
2652257 |
taaggttttggatgaagatgcagtgtctaaactcacttgtgtgcttgctct |
2652307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 31294344 - 31294394
Alignment:
| Q |
62 |
aaacttacttgtgtggttgctcttagtccaatgtgttgatccaactcagtg |
112 |
Q |
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| T |
31294344 |
aaactcacttgtgtggttgctcttggtccaatgtgatgatccaacccagtg |
31294394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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