View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10506_low_6 (Length: 322)

Name: NF10506_low_6
Description: NF10506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10506_low_6
NF10506_low_6
[»] chr8 (9 HSPs)
chr8 (263-310)||(9467378-9467425)
chr8 (263-310)||(5828340-5828387)
chr8 (263-306)||(24903254-24903297)
chr8 (263-310)||(453900-453947)
chr8 (263-302)||(17012801-17012840)
chr8 (263-302)||(17544361-17544400)
chr8 (263-310)||(39659716-39659762)
chr8 (263-305)||(22654570-22654612)
chr8 (269-302)||(17931296-17931329)
[»] chr7 (13 HSPs)
chr7 (263-310)||(6967342-6967389)
chr7 (263-310)||(17857884-17857931)
chr7 (263-310)||(17866357-17866404)
chr7 (263-306)||(709787-709830)
chr7 (263-306)||(2252177-2252220)
chr7 (267-310)||(16547316-16547359)
chr7 (267-310)||(16618303-16618346)
chr7 (263-306)||(23598532-23598575)
chr7 (263-310)||(38431706-38431753)
chr7 (266-310)||(6964600-6964644)
chr7 (267-306)||(20100950-20100989)
chr7 (265-310)||(3540930-3540974)
chr7 (269-306)||(26460771-26460808)
[»] chr6 (11 HSPs)
chr6 (263-306)||(2331588-2331631)
chr6 (263-310)||(14790813-14790860)
chr6 (263-310)||(14795841-14795888)
chr6 (263-310)||(12747122-12747169)
chr6 (263-306)||(22920835-22920878)
chr6 (263-310)||(11411076-11411123)
chr6 (263-306)||(17232161-17232204)
chr6 (267-306)||(22221920-22221959)
chr6 (267-306)||(22247755-22247794)
chr6 (263-310)||(28894239-28894286)
chr6 (265-312)||(33678947-33678996)
[»] chr5 (8 HSPs)
chr5 (263-310)||(34406043-34406090)
chr5 (263-310)||(2499766-2499813)
chr5 (263-306)||(26727252-26727295)
chr5 (263-309)||(21680672-21680717)
chr5 (265-310)||(33320685-33320730)
chr5 (266-310)||(1810197-1810241)
chr5 (263-310)||(33921409-33921455)
chr5 (269-302)||(20056160-20056193)
[»] chr1 (14 HSPs)
chr1 (263-310)||(10765114-10765161)
chr1 (263-310)||(13493457-13493504)
chr1 (263-306)||(17902557-17902600)
chr1 (263-306)||(20981665-20981708)
chr1 (269-310)||(18392706-18392747)
chr1 (267-306)||(24200017-24200056)
chr1 (263-310)||(34552442-34552488)
chr1 (263-306)||(37642167-37642210)
chr1 (263-310)||(49716684-49716731)
chr1 (263-310)||(49720166-49720213)
chr1 (269-306)||(16838709-16838746)
chr1 (269-306)||(16848639-16848676)
chr1 (265-306)||(50196721-50196762)
chr1 (265-305)||(14546487-14546527)
[»] scaffold0401 (1 HSPs)
scaffold0401 (263-309)||(4573-4619)
[»] scaffold0043 (2 HSPs)
scaffold0043 (265-310)||(13905-13950)
scaffold0043 (265-310)||(11562-11607)
[»] chr4 (11 HSPs)
chr4 (265-309)||(647209-647253)
chr4 (265-309)||(650481-650525)
chr4 (263-306)||(3719265-3719308)
chr4 (263-306)||(19929195-19929238)
chr4 (263-310)||(33400079-33400126)
chr4 (263-306)||(3734619-3734662)
chr4 (263-302)||(8871474-8871513)
chr4 (263-306)||(14702212-14702255)
chr4 (263-306)||(49639586-49639629)
chr4 (265-310)||(37176950-37176993)
chr4 (270-306)||(11561123-11561159)
[»] scaffold0175 (1 HSPs)
scaffold0175 (263-306)||(28428-28471)
[»] scaffold0012 (1 HSPs)
scaffold0012 (263-306)||(26647-26690)
[»] scaffold0068 (1 HSPs)
scaffold0068 (263-309)||(33734-33779)
[»] scaffold0264 (1 HSPs)
scaffold0264 (267-306)||(24193-24232)
[»] scaffold0083 (1 HSPs)
scaffold0083 (263-310)||(42914-42961)
[»] scaffold0045 (1 HSPs)
scaffold0045 (267-310)||(90306-90349)
[»] chr3 (10 HSPs)
chr3 (263-306)||(5886751-5886794)
chr3 (263-306)||(5896735-5896778)
chr3 (263-306)||(6173117-6173160)
chr3 (263-306)||(16314357-16314400)
chr3 (263-306)||(16414523-16414566)
chr3 (263-306)||(18495351-18495394)
chr3 (263-310)||(19869292-19869339)
chr3 (263-306)||(23374497-23374540)
chr3 (263-295)||(3306177-3306209)
chr3 (263-307)||(4225621-4225664)
[»] chr2 (2 HSPs)
chr2 (263-306)||(18939200-18939243)
chr2 (263-306)||(22592819-22592862)
[»] scaffold0067 (1 HSPs)
scaffold0067 (269-306)||(27668-27705)


Alignment Details
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 9467425 - 9467378
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  9467425 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttc 9467378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 5828387 - 5828340
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||||||||||||||||||||| |||||||| ||||| ||||||||    
T  5828387 agatatttggcaagtgtaccaaaagctatcgaagtagtagtaaagttc 5828340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 24903254 - 24903297
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  24903254 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 24903297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 453947 - 453900
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    ||||||||| ||||||||||||||||||| ||| || |||||||||||    
T  453947 agatatttgacaagtgtaccaaaaactatggaagtactaataaagttc 453900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 302
Target Start/End: Original strand, 17012801 - 17012840
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaa 302  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  17012801 agatatttggcaagtgtaccaataactatcgaagtagtaa 17012840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 302
Target Start/End: Complemental strand, 17544400 - 17544361
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaa 302  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  17544400 agatatttggcaagtgtaccaataactatcgaagtagtaa 17544361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 39659716 - 39659762
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||||||||||||||||| ||| |||||||| ||||||||||||||    
T  39659716 agatatttggcaagtgtaccgaaa-ctatcgaagtagtaataaagttc 39659762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Complemental strand, 22654612 - 22654570
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataa 305  Q
    |||||||||||||||||| ||| |||||||||| |||||||||    
T  22654612 agatatttggcaagtgtatcaataactatcgaagtagtaataa 22654570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 17931329 - 17931296
Alignment:
Q  269 ttggcaagtgtaccaaaaactatcgaattagtaa 302  Q
    ||||||||||||||||||||||||||| ||||||    
T  17931329 ttggcaagtgtaccaaaaactatcgaagtagtaa 17931296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 6967389 - 6967342
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  6967389 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttc 6967342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 17857884 - 17857931
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  17857884 agatatttggcaagtgtaccaaaagctatcgaaatagtaataaagttc 17857931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 17866357 - 17866404
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  17866357 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttc 17866404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 709787 - 709830
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  709787 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 709830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 2252220 - 2252177
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  2252220 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 2252177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 310
Target Start/End: Complemental strand, 16547359 - 16547316
Alignment:
Q  267 atttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||||||||||||||||| |||||||| ||||||||||||||    
T  16547359 atttggcaagtgtaccaaaagctatcgaagtagtaataaagttc 16547316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 310
Target Start/End: Original strand, 16618303 - 16618346
Alignment:
Q  267 atttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||||||||||||||||| |||||||| ||||||||||||||    
T  16618303 atttggcaagtgtaccaaaagctatcgaagtagtaataaagttc 16618346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 23598532 - 23598575
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  23598532 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 23598575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 38431753 - 38431706
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||||||| ||||||||||||| |||||||| ||||||||||||||    
T  38431753 agatatttggaaagtgtaccaaaagctatcgaagtagtaataaagttc 38431706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 6964644 - 6964600
Alignment:
Q  266 tatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||||    
T  6964644 tatttggtaagtgtaccaaaaactatcgaagtagtaatgaagttc 6964600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 306
Target Start/End: Complemental strand, 20100989 - 20100950
Alignment:
Q  267 atttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  20100989 atttggcaagtgtaccaataactatcgaagtagtaataaa 20100950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 3540930 - 3540974
Alignment:
Q  265 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||||||||||||||| ||||||||| || ||||||||||||||    
T  3540930 atatttggcaagtgtacc-aaaactatcaaagtagtaataaagttc 3540974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 26460808 - 26460771
Alignment:
Q  269 ttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  26460808 ttggcaagtgtaccaataactatcgaagtagtaataaa 26460771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 2331631 - 2331588
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  2331631 agatatttggcaagtgtaccaaaaactatcgaagtagtaataaa 2331588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 14790860 - 14790813
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  14790860 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttc 14790813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 14795888 - 14795841
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  14795888 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttc 14795841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 12747169 - 12747122
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    ||||||||| |||||||||||||| |||||||| ||||||||||||||    
T  12747169 agatatttgacaagtgtaccaaaagctatcgaagtagtaataaagttc 12747122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 22920878 - 22920835
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  22920878 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 22920835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 11411123 - 11411076
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    ||||| ||| ||||||||||||||||||||||| || |||||||||||    
T  11411123 agataattgacaagtgtaccaaaaactatcgaagtaataataaagttc 11411076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 17232204 - 17232161
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||    
T  17232204 agatatttgacaagtgtaccaataactatcgaagtagtaataaa 17232161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 306
Target Start/End: Complemental strand, 22221959 - 22221920
Alignment:
Q  267 atttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||||||| |||||||| ||||||||||    
T  22221959 atttggcaagtgtaccaaaagctatcgaagtagtaataaa 22221920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 306
Target Start/End: Complemental strand, 22247794 - 22247755
Alignment:
Q  267 atttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||||||| |||||||| ||||||||||    
T  22247794 atttggcaagtgtaccaaaagctatcgaagtagtaataaa 22247755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 28894239 - 28894286
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    ||||||||| |||||||| ||||| |||||||| ||||||||||||||    
T  28894239 agatatttgacaagtgtaacaaaagctatcgaagtagtaataaagttc 28894286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 33678947 - 33678996
Alignment:
Q  265 atatttggcaagtgtacc--aaaaactatcgaattagtaataaagttcat 312  Q
    ||||||||||||||||||  ||||||||||||| ||||| ||||||||||    
T  33678947 atatttggcaagtgtaccaaaaaaactatcgaagtagtactaaagttcat 33678996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 34406090 - 34406043
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  34406090 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttc 34406043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 2499766 - 2499813
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||||    
T  2499766 agatatttggcaagtgtaccaaaagatatcgaagtagtaataaagttc 2499813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 26727295 - 26727252
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  26727295 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 26727252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 21680717 - 21680672
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagtt 309  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||    
T  21680717 agatatttggcaagtgtacc-aaaactatcgaagtagtaataaagtt 21680672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 33320685 - 33320730
Alignment:
Q  265 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||||||||||||||||||| |||||||| || |||||||||||    
T  33320685 atatttggcaagtgtaccaaaagctatcgaagtaataataaagttc 33320730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 1810197 - 1810241
Alignment:
Q  266 tatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||| |||||||||||||| |||||||| ||||||||||||||    
T  1810197 tatttgacaagtgtaccaaaagctatcgaagtagtaataaagttc 1810241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 33921455 - 33921409
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    ||||||| |||||||||||||||| |||||||| ||||||||||||||    
T  33921455 agatattcggcaagtgtaccaaaa-ctatcgaagtagtaataaagttc 33921409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 20056193 - 20056160
Alignment:
Q  269 ttggcaagtgtaccaaaaactatcgaattagtaa 302  Q
    ||||||||||||||||||||||||||| ||||||    
T  20056193 ttggcaagtgtaccaaaaactatcgaagtagtaa 20056160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 10765161 - 10765114
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  10765161 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttc 10765114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 13493504 - 13493457
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  13493504 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttc 13493457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 17902557 - 17902600
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  17902557 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 17902600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 20981708 - 20981665
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  20981708 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 20981665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 18392747 - 18392706
Alignment:
Q  269 ttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||||||||||||||| |||||||| ||||||||||||||    
T  18392747 ttggcaagtgtaccaaaagctatcgaagtagtaataaagttc 18392706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 306
Target Start/End: Original strand, 24200017 - 24200056
Alignment:
Q  267 atttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  24200017 atttggcaagtgtaccaataactatcgaagtagtaataaa 24200056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 34552442 - 34552488
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    ||||||||| |||||||||||||| |||||||| ||||||||||||||    
T  34552442 agatatttgacaagtgtaccaaaa-ctatcgaagtagtaataaagttc 34552488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 37642210 - 37642167
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||    
T  37642210 agatatttgacaagtgtaccaataactatcgaagtagtaataaa 37642167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 49716731 - 49716684
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    ||||| ||| ||||||||||||||||||||||| || |||||||||||    
T  49716731 agataattgacaagtgtaccaaaaactatcgaagtaataataaagttc 49716684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 49720213 - 49720166
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    ||||| ||| ||||||||||||||||||||||| || |||||||||||    
T  49720213 agataattgacaagtgtaccaaaaactatcgaagtaataataaagttc 49720166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 16838709 - 16838746
Alignment:
Q  269 ttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  16838709 ttggcaagtgtaccaataactatcgaagtagtaataaa 16838746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 16848639 - 16848676
Alignment:
Q  269 ttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  16848639 ttggcaagtgtaccaataactatcgaagtagtaataaa 16848676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 50196721 - 50196762
Alignment:
Q  265 atatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    ||||||||||||||||||||||||||| ||| || |||||||    
T  50196721 atatttggcaagtgtaccaaaaactattgaagtaataataaa 50196762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 14546487 - 14546527
Alignment:
Q  265 atatttggcaagtgtaccaaaaactatcgaattagtaataa 305  Q
    |||||||||||||||| ||||||||||||||  ||||||||    
T  14546487 atatttggcaagtgtatcaaaaactatcgaagaagtaataa 14546527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 4619 - 4573
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagtt 309  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||    
T  4619 agatatttggcaagtgtacaaaaaactatcgaagtagtaataaagtt 4573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 13950 - 13905
Alignment:
Q  265 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||    
T  13950 atatttggcaagtgtaccaaaagctatcgaagtagtaataaagttc 13905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 11607 - 11562
Alignment:
Q  265 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||||||||||||||||||| ||||||||  |||||||||||||    
T  11607 atatttggcaagtgtaccaaaagctatcgaagcagtaataaagttc 11562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 647209 - 647253
Alignment:
Q  265 atatttggcaagtgtaccaaaaactatcgaattagtaataaagtt 309  Q
    |||||||||||||||||||||| |||||||| |||||||||||||    
T  647209 atatttggcaagtgtaccaaaagctatcgaagtagtaataaagtt 647253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 650481 - 650525
Alignment:
Q  265 atatttggcaagtgtaccaaaaactatcgaattagtaataaagtt 309  Q
    |||||||||||||||||||||| |||||||| |||||||||||||    
T  650481 atatttggcaagtgtaccaaaagctatcgaagtagtaataaagtt 650525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 3719265 - 3719308
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  3719265 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 3719308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 19929238 - 19929195
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  19929238 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 19929195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 33400079 - 33400126
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||||    
T  33400079 agatatttggcaagtgtaccaaaagctatcgaggtagtaataaagttc 33400126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 3734662 - 3734619
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||    
T  3734662 agataattggcaagtgtaccaataactatcgaagtagtaataaa 3734619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 302
Target Start/End: Original strand, 8871474 - 8871513
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaa 302  Q
    |||||| |||||||||||||||||||||||||| ||||||    
T  8871474 agatatctggcaagtgtaccaaaaactatcgaagtagtaa 8871513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 14702255 - 14702212
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    ||||||||||||| |||||||| |||||||||| ||||||||||    
T  14702255 agatatttggcaaatgtaccaataactatcgaagtagtaataaa 14702212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 49639586 - 49639629
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||    
T  49639586 agataattggcaagtgtaccaataactatcgaagtagtaataaa 49639629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 37176993 - 37176950
Alignment:
Q  265 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||||||||||||||||||| |||||||  ||||||||||||||    
T  37176993 atatttggcaagtgtaccaaaagctatcga--tagtaataaagttc 37176950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 306
Target Start/End: Complemental strand, 11561159 - 11561123
Alignment:
Q  270 tggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  11561159 tggcaagtgtacaaaaaactatcgaagtagtaataaa 11561123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 28428 - 28471
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  28428 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 28471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 26647 - 26690
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  26647 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 26690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 33734 - 33779
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagtt 309  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||    
T  33734 agatatttggcaagtgtacc-aaaactatcgaagtagtaataaagtt 33779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 306
Target Start/End: Original strand, 24193 - 24232
Alignment:
Q  267 atttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||||||| |||||||| ||||||||||    
T  24193 atttggcaagtgtaccaaaagctatcgaagtagtaataaa 24232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 42961 - 42914
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    ||||||||| |||||||||||||| |||||||| | ||||||||||||    
T  42961 agatatttgtcaagtgtaccaaaagctatcgaagtcgtaataaagttc 42914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 310
Target Start/End: Original strand, 90306 - 90349
Alignment:
Q  267 atttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    |||||||||||||||||||| |||||||| || |||||||||||    
T  90306 atttggcaagtgtaccaaaagctatcgaagtactaataaagttc 90349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 5886751 - 5886794
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||    
T  5886751 agataattggcaagtgtaccaataactatcgaagtagtaataaa 5886794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 5896735 - 5896778
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||    
T  5896735 agataattggcaagtgtaccaataactatcgaagtagtaataaa 5896778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 6173117 - 6173160
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||    
T  6173117 agatagttggcaagtgtaccaataactatcgaagtagtaataaa 6173160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 16314357 - 16314400
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||    
T  16314357 agatatttggcaagtgtaccaataactatggaagtagtaataaa 16314400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 16414523 - 16414566
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||    
T  16414523 agatatttggcaagtgtaccaataactatggaagtagtaataaa 16414566  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 18495351 - 18495394
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||    
T  18495351 agatatttggcaagtgtaccaataactatggaagtagtaataaa 18495394  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 19869339 - 19869292
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttc 310  Q
    ||||||||||||||||||| |||| ||||| || ||||||||||||||    
T  19869339 agatatttggcaagtgtactaaaatctatcaaagtagtaataaagttc 19869292  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 23374497 - 23374540
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||    
T  23374497 agataattggcaagtgtaccaataactatcgaaatagtaataaa 23374540  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 3306209 - 3306177
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaa 295  Q
    |||||||||||||||||||||| ||||||||||    
T  3306209 agatatttggcaagtgtaccaataactatcgaa 3306177  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 4225621 - 4225664
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaag 307  Q
    |||||||||||||||||||| || ||||||||| |||||||||||    
T  4225621 agatatttggcaagtgtacc-aatactatcgaagtagtaataaag 4225664  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 18939243 - 18939200
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||    
T  18939243 agataattggcaagtgtaccaataactatcgaagtagtaataaa 18939200  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 22592862 - 22592819
Alignment:
Q  263 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||    
T  22592862 agatatttggtaagtgtaccaataactatcgaagtagtaataaa 22592819  T

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Target: scaffold0067 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 27705 - 27668
Alignment:
Q  269 ttggcaagtgtaccaaaaactatcgaattagtaataaa 306  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  27705 ttggcaagtgtaccaataactatcgaagtagtaataaa 27668  T

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