View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10506_low_7 (Length: 259)
Name: NF10506_low_7
Description: NF10506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10506_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 1538132 - 1538346
Alignment:
| Q |
1 |
aagaggagatgaaaagcagtcataaaggaataaaacaattttctgacatcttcatggttaatgaaatagtgatggattggtccttcaacatttgtgaaaa |
100 |
Q |
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| T |
1538132 |
aagaggagatgaaaagcagtcataaaggaataaaacaattttctgacatcttcatggttaatgaaatagtgatggattggtccttcaacatttgtgaaaa |
1538231 |
T |
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| Q |
101 |
gaaaactagaaatgagaagaagtagttggattgaataaccaaccactgttgcaagcctctgtctatcattgacagagggatgctcaggttgtgttggtgg |
200 |
Q |
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| T |
1538232 |
gaaaactagaaatgagaagaagtagttggattgaataactaaccactgttgcaagcctctgtctatcattgacagagggatgctcaggttgtgttggtgg |
1538331 |
T |
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| Q |
201 |
tgcttcttcatcagc |
215 |
Q |
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| T |
1538332 |
tgcttcttcatcagc |
1538346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 10164475 - 10164263
Alignment:
| Q |
1 |
aagaggagatgaaaagcagtcataaaggaataaaacaattttctgacatcttcatggttaatgaaatagtgatggattggtccttcaacatttgtgaaaa |
100 |
Q |
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|||||||||||||||||||| | ||||||| ||||| | ||| ||||||||| ||||||||||| |||||||||||| |||||||||| ||| |||||| |
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| T |
10164475 |
aagaggagatgaaaagcagttacaaaggaaaaaaacgaatttttgacatctttatggttaatgagatagtgatggatcggtccttcaaggtttttgaaaa |
10164376 |
T |
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| Q |
101 |
gaaaactagaaatgagaagaagtagttggattgaataaccaaccactgttgcaagcctctgtctatcattgacagagggatgctcaggttgtgttggtgg |
200 |
Q |
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||||| ||||||||||||||| ||||| |||||| |||| ||||||||||||||||||| || |||||||||||||| ||||||| ||||||| |||||| |
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| T |
10164375 |
gaaaagtagaaatgagaagaaatagtttgattgagtaactaaccactgttgcaagcctccgtgtatcattgacagagtgatgctcgggttgtggtggtgg |
10164276 |
T |
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| Q |
201 |
tgcttcttcatca |
213 |
Q |
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||||||||||||| |
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| T |
10164275 |
tgcttcttcatca |
10164263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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