View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10506_low_9 (Length: 251)
Name: NF10506_low_9
Description: NF10506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10506_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 2687752 - 2687984
Alignment:
| Q |
1 |
ttcttttgaaacggcaaaatttattaagaccgaaactcttgcaagacgcaaagagatggaaaagaaagcaatacaaagatgccgtatataggcgtaacat |
100 |
Q |
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| T |
2687752 |
ttcttttgaaacggcaaaatttattaagaccgaaactcttacaagacgcaaagagacggaaaaaaaagcaatacaaagatgccgtatataggcgtaacat |
2687851 |
T |
|
| Q |
101 |
ccaccccgcaaacacaagtttgcctcaaccgaaaatgatacaacaaaacaagcaccagaatacaaaaccaaacagcaaggcaaatgctatgggtctgaaa |
200 |
Q |
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| T |
2687852 |
ccaccatgcaaacacaagtttgcctcaaccgaaaatgatacaacaaaacaagcaccagaatacaaaaccaaacagcaaggcaaatgctatgggtctgaaa |
2687951 |
T |
|
| Q |
201 |
tctaataaatcacatcaaaattcaagcccctag |
233 |
Q |
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| T |
2687952 |
tctaataaatcacatcaaaattcaagcccctag |
2687984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 19109461 - 19109554
Alignment:
| Q |
4 |
ttttgaaacggcaaaatttattaagaccgaaactcttgcaagacgcaaagagatggaaaagaaagcaatacaaagatgccgtatataggcgtaacatc |
101 |
Q |
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| T |
19109461 |
ttttgaaacggcaaatattattgaaaccgaaactctcgcaagacgcaaagaggcggagaaaa----aatacaaggatgccacatataggcgtaacatc |
19109554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 52421986 - 52422047
Alignment:
| Q |
172 |
acagcaaggcaaatgctatgggtctgaaatctaataaatcacatcaaaattcaagcccctag |
233 |
Q |
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| T |
52421986 |
acagcaaggcaacagctatgggtctgaaatctaataaaactaaccaaaattcaagcccctag |
52422047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 42851708 - 42851777
Alignment:
| Q |
164 |
aaaaccaaacagcaaggcaaatgctatgggtctgaaatctaataaatcacatcaaaattcaagcccctag |
233 |
Q |
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| T |
42851708 |
aaaaccaatcagcaaggcaacaactatgggtctgaaatctaataaaactaaccaaaattcaagctcctag |
42851777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 20795072 - 20794979
Alignment:
| Q |
12 |
cggcaaaatttattaagaccgaaactcttgcaagacgcaaagagatgg-aaaagaaagcaatacaaagatgccgtatataggcgtaacatccaccc |
106 |
Q |
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|||||||||||| |||| ||||| |||| |||||| |||||||| ||| ||||| || ||||||||| |||||| ||||||| |||||||||||| |
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| T |
20795072 |
cggcaaaatttactaag-ccgaagctctcgcaagatgcaaagaggtggcaaaaggaa-caatacaaaaatgccgcctataggcataacatccaccc |
20794979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 18055104 - 18055071
Alignment:
| Q |
72 |
tacaaagatgccgtatataggcgtaacatccacc |
105 |
Q |
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| T |
18055104 |
tacaaagatgccgcatataggcgtaacatccacc |
18055071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 106
Target Start/End: Complemental strand, 27220903 - 27220870
Alignment:
| Q |
73 |
acaaagatgccgtatataggcgtaacatccaccc |
106 |
Q |
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| T |
27220903 |
acaaagatgccgcatataggcgtaacatccaccc |
27220870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 19535983 - 19535931
Alignment:
| Q |
4 |
ttttgaaacggcaaaatttattaagaccgaaactctt-gcaagacgcaaagag |
55 |
Q |
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||||||||||||||| ||||| | |||||||||||| ||||||||||||||| |
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| T |
19535983 |
ttttgaaacggcaaatattattgaaaccgaaactcttcgcaagacgcaaagag |
19535931 |
T |
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