View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10507_low_2 (Length: 319)
Name: NF10507_low_2
Description: NF10507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10507_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 24 - 314
Target Start/End: Complemental strand, 37783143 - 37782858
Alignment:
| Q |
24 |
ccgatggcttacaaaatgacgtgtcatttacattctcctacacctttgtaaacgatcccaagaaccttcttctnnnnnnnnnngatcccaagaaccaatt |
123 |
Q |
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| T |
37783143 |
ccgatggcttacaaaatgacgtgtcatttacattctcctacacctttttaaacgatcccaagaaccttct-----aaaaaaaaaatcccaagaaccaatt |
37783049 |
T |
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| Q |
124 |
aagatcttccatctcaaccctttctcaattatagtacatctacaccatcaaagatggatcgtgaatgacatgccttttaagattcgtgagaccatcatca |
223 |
Q |
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| T |
37783048 |
aagatcttccatctcaaccctttctcaattatagtacatctacaccatcaaagatggatcgtgaatgacatgccttttaaaattcgtgaaaccatcatca |
37782949 |
T |
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| Q |
224 |
aagagtagcacttgggtgacatactaattggtatttagtaatattgataatattgaccgaccataatgttataagtggctttcttctctct |
314 |
Q |
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| T |
37782948 |
aggagtaacactttggtgacatagtaattagtatttagtaatattggtaatattgaccgaccataatgttttaagtggctttcttttctct |
37782858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 48717074 - 48717025
Alignment:
| Q |
266 |
attgataatattgaccgaccataatgttataagtggctttcttctctctc |
315 |
Q |
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| T |
48717074 |
attgatgatattgaccgaccacaatcttacaagtggctttcttctctctc |
48717025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 52016792 - 52016841
Alignment:
| Q |
266 |
attgataatattgaccgaccataatgttataagtggctttcttctctctc |
315 |
Q |
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| T |
52016792 |
attgataatattgatcaaccatgatgtcacaagtggctttcttctctctc |
52016841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 33380731 - 33380699
Alignment:
| Q |
283 |
accataatgttataagtggctttcttctctctc |
315 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
33380731 |
accataatgtcataagtggctttcttctctctc |
33380699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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