View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10508_high_1 (Length: 386)
Name: NF10508_high_1
Description: NF10508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10508_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 13012468 - 13012846
Alignment:
| Q |
1 |
aaaaacataatttatattagaaaatgaactaaaaaactgaaagtttttcttaattatcgaatatgaatatgtaaactctgccnnnnnnn-gagtga---- |
95 |
Q |
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| T |
13012468 |
aaaaacataatttattttagaaaatgaactaaaaaactgaaagtttttcttaatattcgaatatgaatatgtaaactctgccaaaaaaaagagtaatatg |
13012567 |
T |
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| Q |
96 |
---acaatgaagacnnnnnnnntgtatataatttctatttaaagcgtatatatattcaagagttattttttgttttgaataaatatatttaagag----- |
187 |
Q |
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| T |
13012568 |
taaacaatgaagacaaaaaaa-tgtatataatttctatttatagtgtatatatattcaagagtttttttttgttttgaataaatatatttaagagttatt |
13012666 |
T |
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| Q |
188 |
ttattagtagttattttcttaattgaagcataatattctatggattgagggaacaaattgtagcccgacaaatatgatttatctttgttaagcattatat |
287 |
Q |
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| T |
13012667 |
ttattagtagttattttcttaattgaagcat-atattctatggattgagggaacaaattgtagccacaccaatatgatttatctctctttagcattatat |
13012765 |
T |
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| Q |
288 |
taannnnnnnnattatactagttatttatttttgtttagcatgatattaatgcattggtgtttcttgttttctcagtccat |
368 |
Q |
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| T |
13012766 |
taattttttttattatactagttatttatttttgtttagcatgatattaatgcattggtgtttcttgttttctcagtccat |
13012846 |
T |
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