View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10508_low_1 (Length: 392)
Name: NF10508_low_1
Description: NF10508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10508_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 23686212 - 23686587
Alignment:
| Q |
1 |
ggttttggtatgccatgattttggtgctttccaaacactatacaatctataggtccgggagtaaacgctccatcgccaaacaatttcgctaatgcaaact |
100 |
Q |
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| T |
23686212 |
ggttttggtatgccatgattttggtcctttccaaacactatacaatctataggtccgggagtaaacgctccatcgccaaacaatttcgctaatgcaaact |
23686311 |
T |
|
| Q |
101 |
gttttgtttacttcgcaactacataactattcatgtcaaaaagattatttgaatacaagttttattaatgccatgaaacacagacaaatctatttatctc |
200 |
Q |
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| T |
23686312 |
gttttgtttacttcgcaactacataactattcatgtcaaaaagattatttgaatacaagttttatcaatgccatgaaacacagacaaatctatttatctc |
23686411 |
T |
|
| Q |
201 |
gtaactaatcaactaacaacgtttaatgtagcaccggcgtttagattgaaggtgtgtccaatgtccaatacgtgtcgatgtctgagaccaacagctagtt |
300 |
Q |
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| T |
23686412 |
gtaactaatcaactaacagcgtttaatgtagcaccgacgtttagattgaaggtgtgtccaatgtccaatacgtgtcgatgtctgagaccaacagctagtt |
23686511 |
T |
|
| Q |
301 |
acattctatcacttcaatcttcttaaattgttaccggtgtctatgtgtagtgtcgcgcagtgtccataactccatatct |
379 |
Q |
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| T |
23686512 |
acattctatcacttcaa---tcttaaattgttaccggtgtctatgtgtagtgtcgcgcagtgtccataactccatatct |
23686587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 23744064 - 23744173
Alignment:
| Q |
77 |
caaacaatttcgctaatgcaaactgttttgtttacttcgcaactacataactattcatgtcaaaaagattatttgaatacaagttttattaatgccatga |
176 |
Q |
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| T |
23744064 |
caaacaatttagctaatgcagactgacttgttcccttcgcaactacataactattgatgtaaaaaagattacatggatacaagttttatcaatgccacaa |
23744163 |
T |
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| Q |
177 |
aacacagaca |
186 |
Q |
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|| ||||||| |
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| T |
23744164 |
aagacagaca |
23744173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 23721251 - 23721175
Alignment:
| Q |
89 |
ctaatgcaaactgttttgtttacttcgcaactacataactattcatgtcaaaaagattatttgaatacaagttttat |
165 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||| |||| |||||||||| ||| ||||| ||||||| |
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| T |
23721251 |
ctaatgcagactgatttgtttacttcgcaactacataactattgatgtaaaaaagattaattggatacatgttttat |
23721175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 11203286 - 11203236
Alignment:
| Q |
296 |
tagttacattctatcacttcaatcttcttaaattgttaccggtgtctatgt |
346 |
Q |
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|||||||||||||| ||||| || |||||||| | |||||||||||||||| |
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| T |
11203286 |
tagttacattctattacttccattttcttaaactattaccggtgtctatgt |
11203236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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