View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10508_low_10 (Length: 242)
Name: NF10508_low_10
Description: NF10508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10508_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 51934101 - 51934324
Alignment:
| Q |
1 |
ccagcaacctatgccataagnnnnnnntttaactataaaaacttgtgatgcagtatagcatcttacataccctctcaacaactataggatgccaatgata |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51934101 |
ccagcaacctatgccataagaaaaaaatttaactataaaaacttgtgatgcagtatagcatcttacataccctctcaacaactataggatgccaatgata |
51934200 |
T |
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| Q |
101 |
agaaggcataaaaagaaatgaaaggaatcacaaataccaatgccgtatagccactgataaaatggtacattgtttgggccaagctcagcttgcttactgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51934201 |
agaaggcataaaaagaaatgaaaggaatcacaaataccaatgccgtatagccactgataaaatggtacattgtttgggccaagctcagcttgcttactgg |
51934300 |
T |
|
| Q |
201 |
ggggagtaccccaaatgcatcaca |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
51934301 |
ggggagtaccccaaatgcatcaca |
51934324 |
T |
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