View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10508_low_12 (Length: 215)
Name: NF10508_low_12
Description: NF10508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10508_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 13706476 - 13706292
Alignment:
| Q |
19 |
cacatagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcagaactttcataatttggctgattcccgatattcatcatg |
118 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13706476 |
cacatagccaccaattccatcttctggagtagtcaaaccttcagagaaaaaatcactctcagaactttcataatttggctgattcccgatattcatcatg |
13706377 |
T |
|
| Q |
119 |
ctcagagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagtagtgttgcctttg |
203 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
13706376 |
ctcggagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagcagtgttccctttg |
13706292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 13644027 - 13643843
Alignment:
| Q |
19 |
cacatagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcagaactttcataatttggctgattcccgatattcatcatg |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13644027 |
cacatagccaccaatttcatcttctggagtagtcaaaccttcagagaaaaaatcactctcagaactttcataatttggctgattcccgatattcatcatg |
13643928 |
T |
|
| Q |
119 |
ctcagagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagtagtgttgcctttg |
203 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
13643927 |
ctcagagaattagtcatcatctccttttcaactttcttggcacaagtgacttccattatgtatttcaaaagcagtgttccctttg |
13643843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 34653500 - 34653682
Alignment:
| Q |
21 |
catagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcagaactttcataatttggctgattcccgatattcatcatgct |
120 |
Q |
| |
|
|||| ||| ||||||| || |||||| || ||||||||||||| |||||||||||| || |||||| | ||||| |||||||| | ||||||| ||| |
|
|
| T |
34653500 |
catacccatcaatttcctcatttggattaaccaaaccttcagagctaaaatcactctccgagctttcaaagtttgggtgattcccaaatttcatcacgct |
34653599 |
T |
|
| Q |
121 |
cagagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagtagtgttgcctttg |
203 |
Q |
| |
|
| |||||| |||||| |||||||||| ||| ||| ||| | | |||||||||||||||||||| |||||| || |||||| |
|
|
| T |
34653600 |
cgtagaattcgtcatcagctccttttcagcttccttagcatcattgacttccattatgtatttcaagagtagttttccctttg |
34653682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University