View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10508_low_3 (Length: 372)
Name: NF10508_low_3
Description: NF10508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10508_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 5998819 - 5999039
Alignment:
| Q |
1 |
gttggagaagttctcattgatgctggtgctgaataatattgtcctaatttcatactccaacctttcatcaattcttgtttatttctagttctaggtgtta |
100 |
Q |
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| T |
5998819 |
gttggagaagttctcattgatgctggtgctgaataatattgtcctaatttcatactccaacctttcatcaattcttgtttatttctagttctaggtgtta |
5998918 |
T |
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| Q |
101 |
ca---tttcctgaataagaataaga-nnnnnnngttctctaattttctctcttttgaaaagtggcttcacctttcttaagtactttttcactgcatgtaa |
196 |
Q |
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| T |
5998919 |
cattttttcctgaataagaataagattttttttgttctctaattttctctcttttgaaaagtggcttcacctttcttaagtactttttcactgcatgtaa |
5999018 |
T |
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| Q |
197 |
cacatcaaaatcaaatctcag |
217 |
Q |
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||||||||||||||||||||| |
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| T |
5999019 |
cacatcaaaatcaaatctcag |
5999039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 253 - 364
Target Start/End: Original strand, 5999075 - 5999186
Alignment:
| Q |
253 |
taagacacccttttggtgctttatttgaactaaatgataaaaaagaaaacttggacttaccctctaccttttttgatgattctatatttttgctgctgtt |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5999075 |
taagacacccttttggtgctttatttgaactaaatgataaaaaagaaaacttggacttaccctctaccttttttgatgattctatatttttgctgctgtt |
5999174 |
T |
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| Q |
353 |
ttcacctttgct |
364 |
Q |
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| T |
5999175 |
ttcacttttgct |
5999186 |
T |
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