View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10508_low_4 (Length: 368)
Name: NF10508_low_4
Description: NF10508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10508_low_4 |
 | |
|
| [»] scaffold0272 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0272 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 351
Target Start/End: Complemental strand, 2801 - 2469
Alignment:
| Q |
19 |
ctaacagaacagcagacctgaggctaacatataccaaactgcagtacaccaaaacgcaaactgcacgcaccgcataccccagcctcaacctccgatcttc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2801 |
ctaacagaacagcagacctgaggctaacatataccaaactgcagtacaccaaaacgcaaactgcacgcaccgcataccccagcctcaacctccgatcttc |
2702 |
T |
|
| Q |
119 |
cgaaaccacaccctgaacgaatcagacactccctagggttccaacatcattcgtaatacaaactcgccgacatattcattcgactcaacactcatctcca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2701 |
cgaaaccacaccctgaacgaatcagacactccctagggttccaacatcattcgtaatacaaactcgccgacatattcattcgactcaacacccatctcca |
2602 |
T |
|
| Q |
219 |
cgataaaaccttaatcgcctccaccacctccaccaccccacaaattgtatttgtaaagatgcgatcatttctcaccctccaaatactccaaaccgcggcg |
318 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2601 |
cgataaaaccttaatcgcctctaccacctccactaccccacaaattgtatttgtaaagatgcgatcatttctcaccctccaaatactccaaaccgcggcg |
2502 |
T |
|
| Q |
319 |
tgccaaatcaaccagtaacctttacgaatcttc |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
2501 |
tgccaaatcaaccagtaacctttacgaatcttc |
2469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 351
Target Start/End: Complemental strand, 5038288 - 5037956
Alignment:
| Q |
19 |
ctaacagaacagcagacctgaggctaacatataccaaactgcagtacaccaaaacgcaaactgcacgcaccgcataccccagcctcaacctccgatcttc |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5038288 |
ctaacagaacagcagacttgaggctaacatatacaaaactgcagtacaccaaaccgcacactgcacacaccgcataccccagcctcaacctccgatcttc |
5038189 |
T |
|
| Q |
119 |
cgaaaccacaccctgaacgaatcagacactccctagggttccaacatcattcgtaatacaaactcgccgacatattcattcgactcaacactcatctcca |
218 |
Q |
| |
|
||||| | |||| ||||||||||||||||||||||| |||| || |||| ||||||||||||||||| || || ||| ||||||||||| |||||||| |
|
|
| T |
5038188 |
cgaaatggctcccttaacgaatcagacactccctagggctccagcaccatttgtaatacaaactcgccggcacatgcatacgactcaacacccatctcca |
5038089 |
T |
|
| Q |
219 |
cgataaaaccttaatcgcctccaccacctccaccaccccacaaattgtatttgtaaagatgcgatcatttctcaccctccaaatactccaaaccgcggcg |
318 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||| |||||| |||| || ||| |||||| |||||||||| |||||||| ||| |
|
|
| T |
5038088 |
cgataaaaccttaatcgcctccaccgtctccgccaccccacaaactgtattattaaaaatacgacgggttctcagcctccaaatattccaaaccttggca |
5037989 |
T |
|
| Q |
319 |
tgccaaatcaaccagtaacctttacgaatcttc |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
5037988 |
tgccaaatcaaccagtaacctttacgaatcttc |
5037956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 161 - 309
Target Start/End: Complemental strand, 1611722 - 1611575
Alignment:
| Q |
161 |
aacatcattcgtaatacaaactcgccgacatattcattcgactcaacactcatctccacgataaaaccttaatcgcctccaccacctccaccaccccaca |
260 |
Q |
| |
|
|||| ||||||||| |||||||||||| || |||| |||||||||| || |||||| | |||||||||||||||||||| | |||| || ||||||| |
|
|
| T |
1611722 |
aacaccattcgtaa-acaaactcgccggcacgttcaaacgactcaacatgcacctccacaacaaaaccttaatcgcctccactaactccgccgccccaca |
1611624 |
T |
|
| Q |
261 |
aattgtatttgtaaagatgcgatcatttctcaccctccaaatactccaa |
309 |
Q |
| |
|
|||| ||| |||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
1611623 |
aattacattattaaaaatgcgatcattcctcaccctccaaatactccaa |
1611575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 13725912 - 13725842
Alignment:
| Q |
280 |
cgatcatttctcaccctccaaatactccaaaccgcggcgtgccaaatcaaccagtaacctttacgaatctt |
350 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
13725912 |
cgatcatttctcgccctccataaactccaaaccgcggcgtgccaaatcaaccgaaaacctctacgaatctt |
13725842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 329
Target Start/End: Complemental strand, 26728892 - 26728809
Alignment:
| Q |
246 |
ctccaccaccccacaaattgtatttgtaaagatgcgatcatttctcaccctccaaatactccaaaccgcggcgtgccaaatcaa |
329 |
Q |
| |
|
|||| ||||||||||| ||| ||| |||| || || ||||||||| ||||||| |||||||| ||| |||| ||||||||||| |
|
|
| T |
26728892 |
ctcctccaccccacaatttgaattgttaaaaattcgctcatttctcgccctccatatactccacaccacggcatgccaaatcaa |
26728809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 47644491 - 47644688
Alignment:
| Q |
19 |
ctaacagaacagcagacctgaggctaacatataccaaactgcagtacaccaaaacgcaaactgcacgcaccgcataccccagcctcaacctccgatcttc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47644491 |
ctaacagaacagcagacctgaggctaacatataccaaactgcagtacaccaaatctgaaactgcatgcaccgcataccccagcctcaacctccgatcttc |
47644590 |
T |
|
| Q |
119 |
cgaaaccacaccctgaacgaatcagacactccctagggttccaacatcattcgtaatacaaactcgccgacatattcattcgactcaacactcatctc |
216 |
Q |
| |
|
||||||| | |||| ||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||| |||||||||||||||||| |||||| |
|
|
| T |
47644591 |
cgaaacctctcccttaacgaatcagacactccctagggctccaacaccattcgtaatacaaacccgccgacacattcattcgactcaacacccatctc |
47644688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 48721750 - 48721701
Alignment:
| Q |
282 |
atcatttctcaccctccaaatactccaaaccgcggcgtgccaaatcaacc |
331 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || |||||||| |||| |
|
|
| T |
48721750 |
atcatttcttgccctccaaatactccaaaccgccgcatgccaaattaacc |
48721701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 351
Target Start/End: Original strand, 34800098 - 34800250
Alignment:
| Q |
199 |
cgactcaacactcatctccacgataaaaccttaatcgcctccaccacctccaccaccccacaaattgtatttgtaaagatgcgatcatttctcaccctcc |
298 |
Q |
| |
|
|||||||||| ||||||||| | |||||||||||||||||||| | |||| | | |||||| | ||| ||||||| |||||||||| |||||||| |
|
|
| T |
34800098 |
cgactcaacatccatctccactacaaaaccttaatcgcctccactaactccgcagctccacaagtaacattattaaagatacgatcatttcgcaccctcc |
34800197 |
T |
|
| Q |
299 |
aaatactccaaaccgcggcgtgccaaatcaaccagtaacctttacgaatcttc |
351 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| || |||||||||| |||| |
|
|
| T |
34800198 |
aaatactccacaccgcggcatgccaaatcaactgataccctttacgaaccttc |
34800250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 34514909 - 34514961
Alignment:
| Q |
19 |
ctaacagaacagcagacctgaggctaacatataccaaactgcagtacaccaaa |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34514909 |
ctaacagaacagcagacctgaggctaacatatacaaaactgcagtacaccaaa |
34514961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 331
Target Start/End: Complemental strand, 11889144 - 11888908
Alignment:
| Q |
86 |
caccgcataccccagcctcaacctccgatcttccgaaaccacaccctgaacgaatcagacactccctagggttccaacatcattcgtaatacaaactcgc |
185 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| | || | || | || |||||||| || || |||||| |||| ||| |||||||||| |
|
|
| T |
11889144 |
caccgcataccccagcctcaacctccgcgataccgaaacagccccattaaagcatgagacactctcttaggcaccaacactattcataaaacaaactcgc |
11889045 |
T |
|
| Q |
186 |
cgacatattcattcgactcaacactcatctccacgataaaaccttaatcgcctccaccacctccaccaccccacaaattgtatttgtaaagatgcgatca |
285 |
Q |
| |
|
| | |||| |||||||||| || |||||||| |||||||||||||||||||| | | |||||||||| ||| |||| |||| |||| |
|
|
| T |
11889044 |
tggtaccttcaaacgactcaacatccacctccacgacaaaaccttaatcgcctccactatc--------cccacaaattaaattgttaaaaatgc-atca |
11888954 |
T |
|
| Q |
286 |
tttctcaccctccaaatactccaaaccgcggcgtgccaaatcaacc |
331 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11888953 |
tttctcgccctccaaatactccaaaccgcgggatgccaaatcaacc |
11888908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 10909517 - 10909587
Alignment:
| Q |
280 |
cgatcatttctcaccctccaaatactccaaaccgcggcgtgccaaatcaaccagtaacctttacgaatctt |
350 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
10909517 |
cgatcatttctcaccctccataaactccaaaccgcggcgtgccaaatcaaccgaaaacctctacgaatctt |
10909587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 331
Target Start/End: Complemental strand, 15858570 - 15858450
Alignment:
| Q |
211 |
catctccacgataaaaccttaatcgcctccaccacctccaccaccccacaaattgtatttgtaaagatgcgatcatttctcaccctccaaatactccaaa |
310 |
Q |
| |
|
||||||||||| | |||||| ||||||||||| | ||||||||| ||||| || | |||| || || || ||||||||||||||||||||||||| |
|
|
| T |
15858570 |
catctccacgacagaaccttgatcgcctccactaactccaccacttcacaatttacaccgttaaaaatacggtcgtttctcaccctccaaatactccaaa |
15858471 |
T |
|
| Q |
311 |
ccgcggcgtgccaaatcaacc |
331 |
Q |
| |
|
|||| || ||||||||||||| |
|
|
| T |
15858470 |
ccgcagcatgccaaatcaacc |
15858450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 34326297 - 34326254
Alignment:
| Q |
283 |
tcatttctcaccctccaaatactccaaaccgcggcgtgccaaat |
326 |
Q |
| |
|
|||||||| || ||||||||| |||||||||||||||||||||| |
|
|
| T |
34326297 |
tcatttctaactctccaaatagtccaaaccgcggcgtgccaaat |
34326254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University