View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10508_low_5 (Length: 354)
Name: NF10508_low_5
Description: NF10508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10508_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 5955310 - 5955647
Alignment:
| Q |
1 |
gctcaatcacaaaacaaccatcaaggaccaacatttccacaaactcattgctgcttaacccgatcgttccttcataacaagatcttgctttttcttccat |
100 |
Q |
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| T |
5955310 |
gctcaatcacaaaacaaccatcaaggaccaacatttccacaaactcattgctgcttaacccgatcgttccttcataacaagatcttgctttttcttccat |
5955409 |
T |
|
| Q |
101 |
ctctttcattgcatccagataaagcctaatgtcatgttttgtcctcttaagaacgtggttaatggaacgccatttatgacgttccatttgtcgaaggcgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5955410 |
ctctttcattgcatccagataaagcctaatgtcatgttttgtcctcttaagaacgtggttaatggaacgccatttatgacgttccatttgtcgaaggcgt |
5955509 |
T |
|
| Q |
201 |
tttttgccatgatggtatggtcctaaggacacaatctgtggtgcaaaagctttgtcgtcgccactactatctctaaggtaatgagggattttgtagattg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5955510 |
tttttgccatgatggtatggtcctaaggacacaatctgtggtgcaaaagctttgtcgtcgccactactatctctaaggtaatgagggattttgtagattg |
5955609 |
T |
|
| Q |
301 |
atagcttagtccatgaacttgctacatcgtcttgattc |
338 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
5955610 |
atagcttagtccatgaacttgctacatcgtcttgattc |
5955647 |
T |
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