View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10508_low_7 (Length: 276)
Name: NF10508_low_7
Description: NF10508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10508_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 5 - 255
Target Start/End: Complemental strand, 28250585 - 28250335
Alignment:
| Q |
5 |
agtattaaaggtttcctatgtttttgaggagagggaataagtgtattcaaggtgttgttgtttaagtatttgaggttaggatgttgtgcccacccaagat |
104 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28250585 |
agtactaaaggtttcctatgtttttgaggagagggaataagtgtattcaaggtgttgttgtttaagtatttgaggataggatgttgtgcccacccaagat |
28250486 |
T |
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| Q |
105 |
tataagtatttgagtaagggttcccttttttgtatttccccatgtagttggcttcctcactccctcctttaggtatacactcaccatttgtatggacctc |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28250485 |
tataagtatttgagtaagggttcccttttttgtatttccccatgtagttggcttccttactccctcctttaggtatacactcaccatttgtatggacctc |
28250386 |
T |
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| Q |
205 |
accaaaaaagtcacatctcagaattggtgcttgttggatttgttgaacttg |
255 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28250385 |
accaaaaaagtcacatctcataattggtgcttgttggatttgttgaacttg |
28250335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 12815435 - 12815548
Alignment:
| Q |
53 |
aaggtgttgttgtttaagtatttgaggttaggatgttgtgcccacccaagattataagtatttgagtaagggttcccttttttgtatttccccatgtagt |
152 |
Q |
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| T |
12815435 |
aaggtgttgttatttgagtacttgaggttaggatgttgtgccaatgttgaattataggtattcgattaagggttctctttttggtaattccccgtgtagt |
12815534 |
T |
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| Q |
153 |
tggcttcctcactc |
166 |
Q |
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| T |
12815535 |
tggcatcctcactc |
12815548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 12815564 - 12815680
Alignment:
| Q |
103 |
attataagtatttgagtaagggttcccttttttgtatttccccatgtagttggcttcctcactccctcctttaggtatacactcaccatttgtatggacc |
202 |
Q |
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| T |
12815564 |
attataggtattcgattaagggttgcctttttggtaaatccccatgtagttggcatcatcactcactacttcattcatacactcatcatttacatgtccc |
12815663 |
T |
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| Q |
203 |
tcaccaaaaaagtcaca |
219 |
Q |
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| T |
12815664 |
tcaccacaaaaatcaca |
12815680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 192
Target Start/End: Complemental strand, 1934259 - 1934120
Alignment:
| Q |
53 |
aaggtgttgttgtttaagtatttgaggttaggatgttgtgcccacccaagattataagtatttgagtaagggttcccttttttgtatttccccatgtagt |
152 |
Q |
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| T |
1934259 |
aaggtggtgttgtttgaatatttgaggttaggattttgtgtccaccccatattatatgtgtttgagtaagagttctcttcttgataatttatcatataat |
1934160 |
T |
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| Q |
153 |
tggcttcctcactccctcctttaggtatacactcaccatt |
192 |
Q |
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| T |
1934159 |
tggcttcctcactcactccctcgggtacacactcaccatt |
1934120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 192
Target Start/End: Original strand, 21021387 - 21021526
Alignment:
| Q |
53 |
aaggtgttgttgtttaagtatttgaggttaggatgttgtgcccacccaagattataagtatttgagtaagggttcccttttttgtatttccccatgtagt |
152 |
Q |
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|||||||| |||||| | |||||||||| ||||| ||||| |||||| | |||||| || ||||||||||||||| ||| || || || | ||| || |
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| T |
21021387 |
aaggtgttattgtttgaatatttgaggtcaggattttgtgtccaccccatattatatgtgtttgagtaagggttctcttcttgataatttctcatataaa |
21021486 |
T |
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| Q |
153 |
tggcttcctcactccctcctttaggtatacactcaccatt |
192 |
Q |
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|||||||||||||| |||| | |||| |||||||||||| |
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| T |
21021487 |
tggcttcctcactcactccctcgggtacacactcaccatt |
21021526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 38625234 - 38625165
Alignment:
| Q |
28 |
ttgaggagagggaataagtgtattcaaggtgttgttgtttaagtatttgaggttaggatgttgtgcccac |
97 |
Q |
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|||||||| ||||||||| | |||||||||||||||||| ||||||||||| || ||||||||||||| |
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| T |
38625234 |
ttgaggagggggaataagcgagttcaaggtgttgttgtttgagtatttgaggatataatgttgtgcccac |
38625165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 15541150 - 15541202
Alignment:
| Q |
140 |
ttccccatgtagttggcttcctcactccctcctttaggtatacactcaccatt |
192 |
Q |
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|||||||| ||||||||||||||||| ||||| ||||| |||||||||||| |
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| T |
15541150 |
ttccccatatagttggcttcctcactaagtccttcaggtacacactcaccatt |
15541202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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