View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10509_high_2 (Length: 212)
Name: NF10509_high_2
Description: NF10509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10509_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 24644883 - 24645067
Alignment:
| Q |
12 |
agatgaagaagagcatactgaagcatacaaccatgtccagcagacaaaacaaagcgatcacggttaaaccaagaaggattctttgggttatatctcataa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24644883 |
agatgaagaagagcatactgaagcatacaaccatgtccagcagacaaaacaaagcgatcacggttaaaccaagaaggattctttgggttatatctcataa |
24644982 |
T |
|
| Q |
112 |
cttcatcgtaaagaatgtgacccattggagcacaacccatgggtaaaccagggtgacccgaattagctttctcaacggcatcgat |
196 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24644983 |
cttcatcgtatagaatgtgacccattggagcacaacccatgggtaaacccgggtgacccgaattagctttctcaacggcatcgat |
24645067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 52485893 - 52485709
Alignment:
| Q |
12 |
agatgaagaagagcatactgaagcatacaaccatgtccagcagacaaaacaaagcgatcacggttaaaccaagaaggattctttgggttatatctcataa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52485893 |
agatgaagaagagcatactgaagcatacaaccatgtccagcagacaaaacaaagcgatcacggttaaaccaagaaggattctttgggttatatctcataa |
52485794 |
T |
|
| Q |
112 |
cttcatcgtaaagaatgtgacccattggagcacaacccatgggtaaaccagggtgacccgaattagctttctcaacggcatcgat |
196 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
52485793 |
cttcatcgtatagaatgtgacccattggagcacaacccatgggtaaacccgggtgacccgaattagctttctcaacggcatcgat |
52485709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 8338311 - 8338486
Alignment:
| Q |
12 |
agatgaagaagagcatactgaagcatacaaccatgtccagcagacaaaacaaagcgatcacggttaaaccaagaaggattctttgggttatatctcataa |
111 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| | |||||||| |||||||||||||||| |
|
|
| T |
8338311 |
agatgaagcaaagcatactgaagcatacaaccatgaccagcggacaaaacaaaccgatcacggttaaaccaaaacggattcttggggttatatctcataa |
8338410 |
T |
|
| Q |
112 |
cttcatcgtaaagaatgtgacccattggagcacaacccatgggtaaaccagggtgacccgaattagctttctcaac |
187 |
Q |
| |
|
| ||||| ||||| | ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
8338411 |
cctcatcataaagcacatgacccattggagcacaacccataggtaaaccaggatgacccgaattggctttttcaac |
8338486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University