View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10509_low_1 (Length: 438)

Name: NF10509_low_1
Description: NF10509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10509_low_1
NF10509_low_1
[»] chr4 (30 HSPs)
chr4 (65-422)||(34030545-34030902)
chr4 (1-62)||(33703141-33703202)
chr4 (4-62)||(1771308-1771366)
chr4 (5-72)||(17619195-17619262)
chr4 (1-62)||(27864564-27864625)
chr4 (1-62)||(28982861-28982922)
chr4 (1-62)||(28988473-28988534)
chr4 (7-63)||(35017732-35017788)
chr4 (1-60)||(27893881-27893940)
chr4 (5-63)||(27316756-27316814)
chr4 (4-65)||(12496953-12497014)
chr4 (1-62)||(23035980-23036041)
chr4 (1-62)||(25051693-25051754)
chr4 (1-62)||(27550309-27550370)
chr4 (1-62)||(48435618-48435679)
chr4 (1-62)||(48463489-48463550)
chr4 (1-68)||(39631094-39631162)
chr4 (1-60)||(43949840-43949900)
chr4 (5-60)||(3756289-3756344)
chr4 (5-67)||(32728352-32728414)
chr4 (2-60)||(43514726-43514784)
chr4 (5-62)||(711960-712017)
chr4 (1-62)||(55966385-55966446)
chr4 (1-61)||(41878407-41878467)
chr4 (5-64)||(55272419-55272478)
chr4 (1-59)||(23204817-23204875)
chr4 (1-63)||(45490352-45490414)
chr4 (1-62)||(960909-960970)
chr4 (5-62)||(46827749-46827806)
chr4 (34-62)||(30189273-30189301)
[»] chr3 (22 HSPs)
chr3 (65-422)||(21390011-21390368)
chr3 (1-63)||(42100687-42100749)
chr3 (1-62)||(40808865-40808926)
chr3 (1-62)||(46941053-46941114)
chr3 (4-62)||(47191068-47191125)
chr3 (4-62)||(54246190-54246248)
chr3 (1-62)||(25413681-25413742)
chr3 (1-62)||(53273723-53273784)
chr3 (1-61)||(54237097-54237157)
chr3 (1-67)||(42394458-42394524)
chr3 (1-63)||(45126967-45127029)
chr3 (3-60)||(1078229-1078286)
chr3 (1-62)||(9434124-9434185)
chr3 (5-62)||(10457935-10457992)
chr3 (1-62)||(24688441-24688502)
chr3 (5-62)||(25996268-25996325)
chr3 (1-60)||(27748565-27748624)
chr3 (4-62)||(4190307-4190365)
chr3 (1-63)||(34791828-34791890)
chr3 (1-63)||(36150129-36150191)
chr3 (1-61)||(40480750-40480810)
chr3 (27-63)||(52629839-52629875)
[»] chr5 (13 HSPs)
chr5 (65-422)||(1397859-1398216)
chr5 (4-68)||(25915029-25915093)
chr5 (3-62)||(33855084-33855143)
chr5 (1-65)||(32473433-32473497)
chr5 (1-63)||(2614688-2614750)
chr5 (1-63)||(22512304-22512366)
chr5 (1-62)||(18033982-18034043)
chr5 (1-62)||(41334702-41334763)
chr5 (1-60)||(5256997-5257056)
chr5 (1-62)||(7617133-7617194)
chr5 (1-62)||(33801469-33801530)
chr5 (5-62)||(17208074-17208131)
chr5 (5-62)||(38470579-38470636)
[»] chr6 (18 HSPs)
chr6 (65-422)||(32465151-32465508)
chr6 (4-62)||(7273377-7273435)
chr6 (1-60)||(24204026-24204085)
chr6 (1-62)||(26670048-26670109)
chr6 (5-62)||(33242403-33242460)
chr6 (1-63)||(13743260-13743322)
chr6 (1-63)||(13748760-13748822)
chr6 (1-63)||(33253912-33253974)
chr6 (1-62)||(7292747-7292808)
chr6 (1-62)||(7367549-7367610)
chr6 (1-62)||(9698372-9698433)
chr6 (2-62)||(26466799-26466859)
chr6 (5-62)||(3213400-3213457)
chr6 (3-64)||(30014341-30014402)
chr6 (4-60)||(30735984-30736040)
chr6 (5-60)||(27441544-27441599)
chr6 (1-62)||(21279929-21279990)
chr6 (5-62)||(21293720-21293777)
[»] chr1 (18 HSPs)
chr1 (1-67)||(43571125-43571191)
chr1 (1-62)||(5489776-5489837)
chr1 (11-68)||(35003288-35003345)
chr1 (1-62)||(44112677-44112738)
chr1 (5-63)||(38335917-38335975)
chr1 (2-68)||(41065147-41065213)
chr1 (5-63)||(48119627-48119685)
chr1 (1-62)||(24769538-24769599)
chr1 (5-62)||(37814778-37814835)
chr1 (1-67)||(50448299-50448365)
chr1 (1-62)||(750344-750405)
chr1 (4-60)||(4401329-4401386)
chr1 (5-62)||(14427347-14427404)
chr1 (5-62)||(38113238-38113295)
chr1 (1-62)||(45427784-45427845)
chr1 (1-62)||(48499001-48499062)
chr1 (5-68)||(7447820-7447882)
chr1 (1-63)||(35000152-35000214)
[»] chr8 (23 HSPs)
chr8 (214-404)||(15244209-15244390)
chr8 (1-60)||(42295197-42295256)
chr8 (1-63)||(29705361-29705423)
chr8 (1-71)||(42197474-42197544)
chr8 (4-62)||(2166005-2166063)
chr8 (1-63)||(11582765-11582827)
chr8 (1-62)||(35181516-35181577)
chr8 (1-62)||(36743522-36743583)
chr8 (1-64)||(1375540-1375603)
chr8 (1-60)||(29800989-29801048)
chr8 (2-60)||(30912602-30912660)
chr8 (1-62)||(5754903-5754964)
chr8 (68-129)||(15244044-15244105)
chr8 (1-62)||(30660781-30660842)
chr8 (1-62)||(34304788-34304849)
chr8 (1-61)||(45397317-45397377)
chr8 (1-68)||(18066757-18066824)
chr8 (5-60)||(42699259-42699314)
chr8 (1-62)||(2546996-2547057)
chr8 (5-62)||(16603669-16603726)
chr8 (26-63)||(28977145-28977182)
chr8 (3-54)||(31384672-31384723)
chr8 (1-60)||(33630032-33630091)
[»] scaffold0119 (1 HSPs)
scaffold0119 (1-62)||(685-746)
[»] chr2 (23 HSPs)
chr2 (5-62)||(4764769-4764826)
chr2 (1-62)||(30838632-30838693)
chr2 (1-63)||(1750413-1750475)
chr2 (1-63)||(12415499-12415561)
chr2 (1-63)||(12427559-12427621)
chr2 (1-63)||(16096746-16096808)
chr2 (1-62)||(43335802-43335863)
chr2 (1-62)||(12302292-12302353)
chr2 (1-62)||(43114557-43114618)
chr2 (1-60)||(33229303-33229363)
chr2 (1-60)||(11825693-11825752)
chr2 (1-60)||(41282013-41282072)
chr2 (1-67)||(19047152-19047218)
chr2 (5-62)||(966877-966934)
chr2 (1-62)||(16803968-16804029)
chr2 (1-62)||(16843250-16843311)
chr2 (1-62)||(34895780-34895841)
chr2 (10-61)||(34817824-34817875)
chr2 (1-60)||(43490440-43490499)
chr2 (5-62)||(18491705-18491762)
chr2 (27-63)||(42849911-42849947)
chr2 (1-60)||(6518508-6518566)
chr2 (1-63)||(13780774-13780836)
[»] chr7 (25 HSPs)
chr7 (1-65)||(44416973-44417037)
chr7 (1-60)||(43343663-43343722)
chr7 (1-62)||(35069721-35069782)
chr7 (1-66)||(42538470-42538535)
chr7 (9-68)||(5194278-5194337)
chr7 (1-68)||(5810963-5811030)
chr7 (1-63)||(24001051-24001113)
chr7 (1-64)||(39998406-39998469)
chr7 (3-60)||(10573751-10573808)
chr7 (1-62)||(40236919-40236980)
chr7 (17-62)||(43317443-43317488)
chr7 (5-60)||(16180400-16180454)
chr7 (1-59)||(26898441-26898499)
chr7 (1-62)||(5015395-5015456)
chr7 (5-62)||(41861674-41861731)
chr7 (1-62)||(42972852-42972913)
chr7 (14-62)||(9216302-9216350)
chr7 (5-65)||(31513284-31513344)
chr7 (1-53)||(32029856-32029908)
chr7 (5-60)||(4638242-4638297)
chr7 (1-63)||(45326019-45326081)
chr7 (9-62)||(27535278-27535331)
chr7 (29-62)||(38160661-38160694)
chr7 (10-62)||(24280644-24280696)
chr7 (5-61)||(31408676-31408732)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-65)||(35495-35559)
[»] scaffold0038 (1 HSPs)
scaffold0038 (1-67)||(112650-112716)
[»] scaffold0187 (2 HSPs)
scaffold0187 (1-62)||(14227-14288)
scaffold0187 (1-62)||(24555-24616)
[»] scaffold0157 (1 HSPs)
scaffold0157 (4-65)||(23463-23524)
[»] scaffold0385 (1 HSPs)
scaffold0385 (1-62)||(11251-11312)
[»] scaffold0003 (1 HSPs)
scaffold0003 (5-60)||(45762-45817)


Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 65 - 422
Target Start/End: Original strand, 34030545 - 34030902
Alignment:
Q  65 aaaagaaaccagttcacgtctctatccctcagattcactctctcaccatggaaacttcacaaaccataaaaatttcagctgcgcaatcgatttgtcatcc 164  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34030545 aaaagaaaccagttcacgtctctccccctcagattcactctctcaccatggaaacttcacaaaccataaaaatttcagctgcgcagtcgatttgtcatcc 34030644  T
Q  165 gttcgtctcgttttccatcatcgtgtcactcgtgttcttcattgactcgtcttcttccatcaatttctattatattccatttttaatttctgctttaata 264  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  34030645 gttcgtctcgttttccatcatcatgtcactcatgttcttcattgactcgtcttcttccatccatttctattatattccatttttaatttctactttaata 34030744  T
Q  265 ttactcaagttgtgctgaaaaatattatgtctatgttgctggtttatgtatttaatgggatctaatgcatattattttaatcaatatttggagtatgtgg 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34030745 ttactcaagttgtgctgaaaaatattatgtctatgttgctggtttatgtatttaatgggatctaatgcatattattttaatcaatatttggagtatgtgg 34030844  T
Q  365 ttaaaaggatttatttgattatgttaaattgatttttgaagctgcaacgtctgttgtt 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34030845 ttaaaaggatttatttgattatgttaaattgatttttgaagctgcaacgtctgttgtt 34030902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 33703202 - 33703141
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||    
T  33703202 tccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttcc 33703141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 1771308 - 1771366
Alignment:
Q  4 ctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||    
T  1771308 ctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 1771366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 17619195 - 17619262
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaaagaaa 72  Q
    |||| |||||||||||||||| |||||| || |||| |||||||||||||||||||||| ||||||||    
T  17619195 taatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacattttccataaaagaaa 17619262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 27864625 - 27864564
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||||||||||||||  | |||| |||||||||||||| ||||||||||||||    
T  27864625 tccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacattttcc 27864564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 28982861 - 28982922
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||| ||||| ||||||||| ||||||| |||||| |||||||||||||||||||||    
T  28982861 tccctaatatatgggatgtacaatagggtgtagaaataaagggtgttcatgtaacattttcc 28982922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 28988534 - 28988473
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||| | ||||||||||||||| ||||||| ||||||| |||||||||||||||||||||    
T  28988534 tccctagtgcatggggtgtacaatgaggtgtatgaataaagggtgttcatgtaacattttcc 28988473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 35017788 - 35017732
Alignment:
Q  7 atacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    |||||||||||||||||| || | |||||||||| ||||||||||||||||||||||    
T  35017788 atacatggggtgtacaatgagatataggaataaagggtgttcatgtaacattttcca 35017732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 27893881 - 27893940
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    ||||||||||||||||||||||||  | |||| |||||||||||||| ||||||||||||    
T  27893881 tccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 27893940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 27316756 - 27316814
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||| | ||||||||||||    
T  27316756 taatacatggggtgtataatgaggtgtaggaataaagggtgttcgtttaacattttcca 27316814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 12497014 - 12496953
Alignment:
Q  4 ctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaa 65  Q
    |||||||||||| ||||||||   ||||||||||||| ||||||||| ||||||||||||||    
T  12497014 ctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacattttccaaa 12496953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23036041 - 23035980
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||| || |||||||||||| |||||||||||||| |  ||||||||||||||||||    
T  23036041 tccctaatatatagggtgtacaatagggtgtaggaataaaggaggttcatgtaacattttcc 23035980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 25051754 - 25051693
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||| |||||||||||  ||||||||||||||  |||||||||| |||||||||    
T  25051754 tccctaatacatagggtgtacaatggggtgtaggaataaagtgtgttcatgtgacattttcc 25051693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 27550370 - 27550309
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||| ||||||||||   |||||| |||||| |||||||||||||||||||||    
T  27550370 tccctaatacatgaggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcc 27550309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 48435618 - 48435679
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||| |||||||||||||||| |||||  || |||||||||||||||||||| |||||    
T  48435618 tccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacactttcc 48435679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 48463489 - 48463550
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||||| |||||||| |  |||| |||||||||||||| ||||||||||||||    
T  48463489 tccctaatacatgggatgtacaatgaaatgtatgaataaatggtgtttatgtaacattttcc 48463550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 39631162 - 39631094
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaat-aaatggtgttcatgtaacattttccaaaaaa 68  Q
    ||||||||||||| |||||||||| |||||||||||| ||| || ||||||||| |||||| |||||||    
T  39631162 tccctaatacatgaggtgtacaatgaggtgtaggaataaaagggggttcatgtatcatttttcaaaaaa 39631094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 43949840 - 43949900
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaat-aaatggtgttcatgtaacatttt 60  Q
    |||||||||||||||||||||||| ||||| |||||| ||| |||||||||||| ||||||    
T  43949840 tccctaatacatggggtgtacaatgaggtgcaggaataaaagggtgttcatgtatcatttt 43949900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 3756289 - 3756344
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    |||| |||||||||||||||| |||||| || |||| |||||||||||||||||||    
T  3756289 taatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 3756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 32728414 - 32728352
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaa 67  Q
    |||| |||||||||||||||| |||||| || |||| | ||||||||||||||||||| ||||    
T  32728414 taatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacattttcctaaaa 32728352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 43514726 - 43514784
Alignment:
Q  2 ccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    ||||||||||||  |||||||||   ||||||||||||| |||||||||||||||||||    
T  43514726 ccctaatacatgaagtgtacaatggagtgtaggaataaagggtgttcatgtaacatttt 43514784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 712017 - 711960
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||| ||| |||||||||||| |||||| || |||| |||||||||||||||||||||    
T  712017 taatgcatagggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 711960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 55966385 - 55966446
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||||| ||||||||  | |||| ||||||| |||||| ||||||||||||||    
T  55966385 tccctaatacatgggatgtacaatgggatgtatgaataaagggtgtttatgtaacattttcc 55966446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 41878467 - 41878407
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttc 61  Q
    ||||||||  || ||||||||||| ||||||| |||||||  |||||||||||||||||||    
T  41878467 tccctaatggatagggtgtacaatgaggtgtatgaataaagagtgttcatgtaacattttc 41878407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 55272419 - 55272478
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaa 64  Q
    |||| ||||||||||||||||  ||||| || |||| | |||||||||||||||||||||    
T  55272419 taatgcatggggtgtacaatagagtgtatgattaaaggatgttcatgtaacattttccaa 55272478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 23204817 - 23204875
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattt 59  Q
    |||||||||||| || ||||||||  | ||||||||||||  |||||||||||||||||    
T  23204817 tccctaatacataggatgtacaatgggatgtaggaataaagagtgttcatgtaacattt 23204875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 45490352 - 45490414
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    ||||||||||||| ||||||||||  | ||||  ||||||  |||||||||||||||||||||    
T  45490352 tccctaatacatgaggtgtacaattggatgtataaataaaatgtgttcatgtaacattttcca 45490414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 960909 - 960970
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||  || ||||||||||||  ||||| || |||| |||||||||||||||||||||    
T  960909 tccctaatgtatagggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcc 960970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 46827749 - 46827806
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||| ||| ||||||||||||  ||||| || |||| |||||||||||||||||||||    
T  46827749 taatgcattgggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcc 46827806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 30189301 - 30189273
Alignment:
Q  34 gaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||||||||||||||||||||    
T  30189301 gaataaatggtgttcatgtaacattttcc 30189273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 65 - 422
Target Start/End: Original strand, 21390011 - 21390368
Alignment:
Q  65 aaaagaaaccagttcacgtctctatccctcagattcactctctcaccatggaaacttcacaaaccataaaaatttcagctgcgcaatcgatttgtcatcc 164  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  21390011 aaaagaaaccagttcacgtctctctccctcagattcactctctcaccatggaaacttcacaaaccataaaaatttcagctgcgcagtcgatttttcatcc 21390110  T
Q  165 gttcgtctcgttttccatcatcgtgtcactcgtgttcttcattgactcgtcttcttccatcaatttctattatattccatttttaatttctgctttaata 264  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21390111 gttcgtctcgttttccgtcatcgtgtaactcgtgttcttcattgactcgtcttcttccatccatttctattatattccatttttaatttctgctttaata 21390210  T
Q  265 ttactcaagttgtgctgaaaaatattatgtctatgttgctggtttatgtatttaatgggatctaatgcatattattttaatcaatatttggagtatgtgg 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21390211 ttactcaagttgtgctgaaaaatattatgtctatgttgctggtttatgtatttattgggatctaatgcatattattttaatcaatatttggagtatgtgg 21390310  T
Q  365 ttaaaaggatttatttgattatgttaaattgatttttgaagctgcaacgtctgttgtt 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21390311 ttaaaaggatttatttgattatgttaaattgatttttgaagctgcaacgtctgttgtt 21390368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 42100749 - 42100687
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  42100749 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcca 42100687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 40808926 - 40808865
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||    
T  40808926 tccctaatacatggggtgtacaatggggtgtaggaataaatggtgttgatgtaacattttcc 40808865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 46941114 - 46941053
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||    
T  46941114 tccctaatacatggggtgtacaatgagatgtaggaataaagggtgttcatgtaacattttcc 46941053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 47191068 - 47191125
Alignment:
Q  4 ctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||    
T  47191068 ctaatacatggg-tgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 47191125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 54246190 - 54246248
Alignment:
Q  4 ctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||| |||||||||||  |||||||||||||| |||||||||||||||||||||    
T  54246190 ctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 54246248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 25413742 - 25413681
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||  ||||||||||  |||||||||||||| |||||||||||||||||||||    
T  25413742 tccctaatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 25413681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 53273723 - 53273784
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||||| |||||||| |||| |||||||||||| ||||||| |||||||||||    
T  53273723 tccctaatacatgggatgtacaatgaggtataggaataaatgatgttcatataacattttcc 53273784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 54237157 - 54237097
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttc 61  Q
    |||||||||||| |||||||||||  | |||||||||||| ||||||||||||||||||||    
T  54237157 tccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttc 54237097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 42394458 - 42394524
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaa 67  Q
    |||||||||||| |||||||||||    |||||||||||| |||||||||||||||||||| |||||    
T  42394458 tccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttctaaaaa 42394524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 45126967 - 45127029
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    ||||||||||||||||||||||||  | |||| ||||||| |||||| |||||||||||||||    
T  45126967 tccctaatacatggggtgtacaatgggatgtatgaataaagggtgtttatgtaacattttcca 45127029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 1078286 - 1078229
Alignment:
Q  3 cctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    ||||||||||  |||||||||| ||||| ||||||||| |||||||||||||||||||    
T  1078286 cctaatacattaggtgtacaatgaggtgcaggaataaagggtgttcatgtaacatttt 1078229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 9434185 - 9434124
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||| ||||||||||||||||  ||||| || |||| |||||||||||||||||||||    
T  9434185 tccctaatgcatggggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcc 9434124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 10457935 - 10457992
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||| |||||||||||||||| |||||| || |||| |||||||||||||||||||||    
T  10457935 taatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacattttcc 10457992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 24688441 - 24688502
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||| |||||||||||   |||||| |||||| |||||||||||||||||||||    
T  24688441 tccctaatacatagggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcc 24688502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 25996325 - 25996268
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||| ||||||||||||||||| |||| || |||| |||||||||||||||||||||    
T  25996325 taatatatggggtgtacaataagatgtatgattaaagggtgttcatgtaacattttcc 25996268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 27748624 - 27748565
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    ||||||||||||  |||||| ||| ||||||| ||||||| |||||||||||||||||||    
T  27748624 tccctaatacataaggtgtataatgaggtgtatgaataaaaggtgttcatgtaacatttt 27748565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 4190307 - 4190365
Alignment:
Q  4 ctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||  ||||||||||| |||||| || |||| |||||||||||||||||||||    
T  4190307 ctaatacataaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 4190365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 34791890 - 34791828
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    |||||||| |||| ||| ||||||| |||||| || |||| ||||||||||||||||||||||    
T  34791890 tccctaatgcatgaggtttacaatatggtgtatgattaaagggtgttcatgtaacattttcca 34791828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 36150191 - 36150129
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    ||||| |||||| ||||||| |||  |||||| ||||||| ||| ||||||||||||||||||    
T  36150191 tccctgatacatagggtgtataatggggtgtatgaataaagggtattcatgtaacattttcca 36150129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 40480810 - 40480750
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttc 61  Q
    |||||||||||| || ||||||||  ||  || ||||||| ||||||||||||||||||||    
T  40480810 tccctaatacataggatgtacaatggggcatatgaataaagggtgttcatgtaacattttc 40480750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 52629875 - 52629839
Alignment:
Q  27 ggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  52629875 ggtgtaggaataaaaggtgttcatgtaatattttcca 52629839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 65 - 422
Target Start/End: Complemental strand, 1398216 - 1397859
Alignment:
Q  65 aaaagaaaccagttcacgtctctatccctcagattcactctctcaccatggaaacttcacaaaccataaaaatttcagctgcgcaatcgatttgtcatcc 164  Q
    |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||     
T  1398216 aaaagaaaccagttcatgtctctctccctcatattcactctctcaccatggaaactttacaaaccataaaaatttcagctgcgcagtcgatttgtcatct 1398117  T
Q  165 gttcgtctcgttttccatcatcgtgtcactcgtgttcttcattgactcgtcttcttccatcaatttctattatattccatttttaatttctgctttaata 264  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1398116 gttcgtctcgttttccgtcatcgtgtaactcgtgttcttcattgactcgtcttcttccatccatttctattatattccatttttaatttctgctttaata 1398017  T
Q  265 ttactcaagttgtgctgaaaaatattatgtctatgttgctggtttatgtatttaatgggatctaatgcatattattttaatcaatatttggagtatgtgg 364  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1398016 ttacttaagttgtgctgaaaaatattatgtctatgtggctggtttatgtatttattgggatctaatgcatattattttaatcaatatttggagtatgtgg 1397917  T
Q  365 ttaaaaggatttatttgattatgttaaattgatttttgaagctgcaacgtctgttgtt 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1397916 ttaaaaggatttatttgattatgttaaattgatttttgaagctgcaacgtctgttgtt 1397859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 25915029 - 25915093
Alignment:
Q  4 ctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaaa 68  Q
    ||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||    
T  25915029 ctaatacattgggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttcaaaaaa 25915093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 33855084 - 33855143
Alignment:
Q  3 cctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||    
T  33855084 cctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 33855143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 32473433 - 32473497
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaa 65  Q
    |||||||| |||| |||||||||||||||||| || |||| ||||||||||||||||||||||||    
T  32473433 tccctaatgcatgtggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttccaaa 32473497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 2614688 - 2614750
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    |||||||||||| |||||||||||  | |||||||||||| ||||||||||||||||||||||    
T  2614688 tccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcca 2614750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 22512366 - 22512304
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    |||||||||||||| |||||||||   ||||||||||||| ||||||||||||||||||||||    
T  22512366 tccctaatacatggagtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcca 22512304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 18034043 - 18033982
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||| |||||||||||   ||||||||||||| |||||||||||||||||||||    
T  18034043 tccctaatacatagggtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcc 18033982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 41334702 - 41334763
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||| ||||||| ||| ||||||| ||||||| |||||||||||||||||||||    
T  41334702 tccctaatacatagggtgtataatgaggtgtatgaataaagggtgttcatgtaacattttcc 41334763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 5257056 - 5256997
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    ||||||||||||||||||||||||  | |||| |||||||||||||| ||||||||||||    
T  5257056 tccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 5256997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 7617194 - 7617133
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||||||||||| |||   ||||| ||||||| |||||||||||||||||||||    
T  7617194 tccctaatacatggggtgtataatggagtgtatgaataaagggtgttcatgtaacattttcc 7617133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 33801530 - 33801469
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||||| |||||||||  ||||||| |||||| | |||||||||||||||||||    
T  33801530 tccctaatacatggagtgtacaatggggtgtagaaataaaggatgttcatgtaacattttcc 33801469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 17208131 - 17208074
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||| ||||||||||||||||| ||||| || |||| |||||||| ||||||||||||    
T  17208131 taatgcatggggtgtacaataaagtgtatgattaaagggtgttcacgtaacattttcc 17208074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 38470636 - 38470579
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||||||||||    |||| ||||||| |||||| ||||||||||||||    
T  38470636 taatacatggggtgtacaatggaatgtatgaataaagggtgtttatgtaacattttcc 38470579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 65 - 422
Target Start/End: Complemental strand, 32465508 - 32465151
Alignment:
Q  65 aaaagaaaccagttcacgtctctatccctcagattcactctctcaccatggaaacttcacaaaccataaaaatttcagctgcgcaatcgatttgtcatcc 164  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| || |||  || ||||| |||||||     
T  32465508 aaaagaaaccagttcacgtctctccccctcagattcactctctcaccatggaaacttcacaaaccataaaaattccaactgtacagtcgatctgtcatct 32465409  T
Q  165 gttcgtctcgttttccatcatcgtgtcactcgtgttcttcattgactcgtcttcttccatcaatttctattatattccatttttaatttctgctttaata 264  Q
    |||||||||||||||| |||| |||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  32465408 gttcgtctcgttttccgtcatagtgtaagtcgtgttcttcattgactcgtcttcttccatccatttctattatattccatttttaatttctactttaata 32465309  T
Q  265 ttactcaagttgtgctgaaaaatattatgtctatgttgctggtttatgtatttaatgggatctaatgcatattattttaatcaatatttggagtatgtgg 364  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||    
T  32465308 ttactcaagttgtgttgaaaaatgttatgtctatgttgctggtttatgtatttattgggatccaatgcatattattttaatcaacatttggagtatgtgg 32465209  T
Q  365 ttaaaaggatttatttgattatgttaaattgatttttgaagctgcaacgtctgttgtt 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32465208 ttaaaaggatttatttgattatgttaaattgatttttgaagctgcaacgtctgttgtt 32465151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 7273377 - 7273435
Alignment:
Q  4 ctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7273377 ctaatacatggggtgtacaataaggtgtaggaataaagggtgttcatgtaacattttcc 7273435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 24204026 - 24204085
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  24204026 tccctaatacatggagtgtacaatagggtgtaggaataaatggtgttcatgtaacatttt 24204085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 26670048 - 26670109
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||    
T  26670048 tccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 26670109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 33242460 - 33242403
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  33242460 taatacatggggtgtacaataaggtgtatgattaaatggtgttcatgtaacattttcc 33242403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 13743260 - 13743322
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    ||||||||||||||||||||||||  | |||| ||||||| ||||||||||||||||||||||    
T  13743260 tccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcca 13743322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 13748760 - 13748822
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    ||||||||||||||||||||||||  | |||| ||||||| ||||||||||||||||||||||    
T  13748760 tccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcca 13748822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 33253974 - 33253912
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    |||||||| |||||||||||||||| |||||  || |||||||||||||||||||||||||||    
T  33253974 tccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacattttcca 33253912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 7292808 - 7292747
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||| ||||||| ||| ||||||| ||||||||||||||| |||||||||||||    
T  7292808 tccctaatacatagggtgtataatgaggtgtatgaataaatggtgttcttgtaacattttcc 7292747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 7367610 - 7367549
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||||| |||||||| ||||||| ||||||||| ||||||| |||||||||||    
T  7367610 tccctaatacatgggatgtacaatgaggtgtatgaataaatgatgttcatataacattttcc 7367549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 9698372 - 9698433
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||| |||||||||||  | |||||||||||| |||||||||||||||||||||    
T  9698372 tccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 9698433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 26466859 - 26466799
Alignment:
Q  2 ccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||| |||||||||  |||||||||||||| |||||| ||||||||||||||    
T  26466859 ccctaatacatggagtgtacaatggggtgtaggaataaagggtgtttatgtaacattttcc 26466799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 3213457 - 3213400
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||||||||||| || |||| ||||||| |||||| ||||||||||||||    
T  3213457 taatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcc 3213400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 30014402 - 30014341
Alignment:
Q  3 cctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaa 64  Q
    ||||||||||||| |||| |||  | |||||||||||| |||||||||||||||||||||||    
T  30014402 cctaatacatgggatgtataatgggatgtaggaataaagggtgttcatgtaacattttccaa 30014341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 30736040 - 30735984
Alignment:
Q  4 ctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    |||||||||| ||||||||||  ||||||||||||||  ||||||||||||||||||    
T  30736040 ctaatacatgaggtgtacaatggggtgtaggaataaaaagtgttcatgtaacatttt 30735984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 27441599 - 27441544
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    |||||||| || ||||||||| |||||| || |||| |||||||||||||||||||    
T  27441599 taatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 27441544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 21279990 - 21279929
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||||| ||| ||||    ||||| |||||| |||||||||||||||||||||    
T  21279990 tccctaatacatgggatgtgcaatggaatgtagaaataaagggtgttcatgtaacattttcc 21279929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 21293720 - 21293777
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||||||||| | |  |||| ||||||| |||||| ||||||||||||||    
T  21293720 taatacatggggtgtacagtgaaatgtatgaataaagggtgtttatgtaacattttcc 21293777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 43571125 - 43571191
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaa 67  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  43571125 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttccaaaaa 43571191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5489837 - 5489776
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||| |||||||||||  | |||||||||||| |||||||||||||||||||||    
T  5489837 tccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 5489776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 35003345 - 35003288
Alignment:
Q  11 atggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaaa 68  Q
    ||||||||||||||| |||||| || |||| |||||||||||||||||||||||||||    
T  35003345 atggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttccaaaaaa 35003288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 44112738 - 44112677
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||| |||||||||||||||| |||||| || |||| |||||||||||||||||||||    
T  44112738 tccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44112677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 38335975 - 38335917
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    |||| |||||| |||||||||||||||| || |||| ||||||||||||||||||||||    
T  38335975 taatgcatgggatgtacaataaggtgtatgattaaagggtgttcatgtaacattttcca 38335917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 41065213 - 41065147
Alignment:
Q  2 ccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaaa 68  Q
    ||||||| |||||||||||||| | |||||| || |||| ||||||||||||||||||||| |||||    
T  41065213 ccctaatgcatggggtgtacaacagggtgtatgattaaagggtgttcatgtaacattttcctaaaaa 41065147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 48119685 - 48119627
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    |||| |||||||||||||||| |||||| || |||| ||||||||||||||||||||||    
T  48119685 taatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcca 48119627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 24769538 - 24769599
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||||||||||||||   |||||| |||||| |||||||||| ||||||||||    
T  24769538 tccctaatacatggggtgtacaatggagtgtagaaataaaaggtgttcatgaaacattttcc 24769599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 37814835 - 37814778
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||||||||||| || |||| ||||||| |||||| ||||||||||||||    
T  37814835 taatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcc 37814778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 50448299 - 50448365
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaa 67  Q
    ||||||||||||  ||||||||||   |||||| ||||||  |||||||||||||||||||||||||    
T  50448299 tccctaatacataaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttccaaaaa 50448365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 750344 - 750405
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||| ||||||||||||||||||  ||||||||||  || |||||||| ||||||||||||    
T  750344 tccctgatacatggggtgtacaatggggtgtaggaaataagggtgttcacgtaacattttcc 750405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 4401386 - 4401329
Alignment:
Q  4 ctaatacatggggtgtacaataaggtgtaggaataaatg-gtgttcatgtaacatttt 60  Q
    ||||||||||||||||||||| | ||||||||||||| | ||||||||||| ||||||    
T  4401386 ctaatacatggggtgtacaatgaagtgtaggaataaaagagtgttcatgtatcatttt 4401329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 14427404 - 14427347
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||| |||| ||||||||||| |||||| || |||| |||||||||||||||||||||    
T  14427404 taatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 14427347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 38113238 - 38113295
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||| |||||||||||||||| |||||| || |||| ||||||||| |||||||||||    
T  38113238 taatgcatggggtgtacaatagggtgtatgattaaagggtgttcatataacattttcc 38113295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 45427784 - 45427845
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||| ||||| |||||||||| |||||| || |||| ||| |||||||||||||||||    
T  45427784 tccctaatgcatggagtgtacaatagggtgtatgattaaaaggtattcatgtaacattttcc 45427845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 48499001 - 48499062
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||| ||||||||||   |||||| ||||||  ||||||||||||||||||||    
T  48499001 tccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 48499062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 7447882 - 7447820
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaaa 68  Q
    ||||||||||| ||||||||  | |||||||||||| | ||||||||||||||||| |||||||    
T  7447882 taatacatggg-tgtacaatgggatgtaggaataaaggatgttcatgtaacatttttcaaaaaa 7447820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 35000152 - 35000214
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    |||||||||||||  || |||||||  ||||| || |||| ||||||||||||||||||||||    
T  35000152 tccctaatacatgaagtatacaatagagtgtatgattaaaaggtgttcatgtaacattttcca 35000214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 214 - 404
Target Start/End: Original strand, 15244209 - 15244390
Alignment:
Q  214 tcttcttccatcaatttctattatattccatttttaatttctgctttaatattactc-aagttgtgctgaaaaatattatgtctatgttgctggtttatg 312  Q
    |||||||||||| ||||||||||| |||||||||| |||| |||||||||||||||| || |||||     ||| ||| || ||||||||||||||||||    
T  15244209 tcttcttccatccatttctattat-ttccattttttattt-tgctttaatattactccaaattgtgt----aaagattctgactatgttgctggtttatg 15244302  T
Q  313 tatttaatgggatctaatgcatattattttaatcaatatttggagtatgtggttaaaaggattta---tttgattatgttaaattgatttttgaa 404  Q
    |||||| | ||||||||||||||     |||||||||||||| |||||||   | ||||||||||    ||||||||||||||||||||||||||    
T  15244303 tatttatttggatctaatgcata-----ttaatcaatatttgtagtatgt--attaaaggatttaattgttgattatgttaaattgatttttgaa 15244390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 42295256 - 42295197
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    |||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||    
T  42295256 tccctaatacatggagtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 42295197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 29705423 - 29705361
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    ||||||||||||||||||||||||  ||||||| |||||| ||||||||||||||||||||||    
T  29705423 tccctaatacatggggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttcca 29705361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 42197474 - 42197544
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaaagaa 71  Q
    |||||||||||| | |||| ||||  |||||||||||||||||||||||||||||||||||| ||||||||    
T  42197474 tccctaatacatagtgtgtgcaatggggtgtaggaataaatggtgttcatgtaacattttcctaaaaagaa 42197544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 2166005 - 2166063
Alignment:
Q  4 ctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||||| ||||||  |||||||||||||||||||||||||||| |||||||    
T  2166005 ctaatacatggggtatacaatggggtgtaggaataaatggtgttcatgtaatattttcc 2166063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 11582827 - 11582765
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    |||||||||||| |||||||||||  | |||||||||||| ||||||||||||||||||||||    
T  11582827 tccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcca 11582765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 35181577 - 35181516
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||| |||||||||||||||| |||||| || |||| |||||||||||||||||||||    
T  35181577 tccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 35181516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 36743522 - 36743583
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||| |||||||||||  | |||||||||||| |||||||||||||||||||||    
T  36743522 tccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 36743583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 1375603 - 1375540
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaa 64  Q
    ||||||||| ||||||||||||||  |||||| ||||||| ||||||||||||| |||||||||    
T  1375603 tccctaatatatggggtgtacaattgggtgtatgaataaaaggtgttcatgtaaaattttccaa 1375540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 29800989 - 29801048
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    ||||||||||||||||||||||||  | |||| |||||||||||||| ||||||||||||    
T  29800989 tccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 29801048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 30912602 - 30912660
Alignment:
Q  2 ccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    ||||||||||||  |||||||||  |||||||||||||| |||||||||||||||||||    
T  30912602 ccctaatacatgaagtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 30912660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5754964 - 5754903
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||| ||||| ||||||||  | |||||||||||| |||||||||||||||||||||    
T  5754964 tccctaatatatgggatgtacaatgggatgtaggaataaaaggtgttcatgtaacattttcc 5754903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 15244044 - 15244105
Alignment:
Q  68 agaaaccagttcacgtctctatccctcagattcactctctcaccatggaaacttcacaaacc 129  Q
    |||||| | ||||||| ||| || |||||| |||||||||||||||||||||||||||||||    
T  15244044 agaaacaatttcacgtttctctctctcagactcactctctcaccatggaaacttcacaaacc 15244105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30660781 - 30660842
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||| |||||||||||  | ||||| |||||| |||||||||||||||||||||    
T  30660781 tccctaatacatagggtgtacaatgggatgtagaaataaagggtgttcatgtaacattttcc 30660842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 34304849 - 34304788
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||| |||||||||||||||| |||||| || |||| | |||||||||||||||||||    
T  34304849 tccctaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacattttcc 34304788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 45397377 - 45397317
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttc 61  Q
    |||||||||||| ||||||| |||  |||||||||||||| |||||||| |||||||||||    
T  45397377 tccctaatacatagggtgtagaatggggtgtaggaataaagggtgttcacgtaacattttc 45397317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 18066757 - 18066824
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaaa 68  Q
    ||||||||||||||| |||||||||   |||| || |||| ||||||||||||||||||||| |||||    
T  18066757 tccctaatacatgggatgtacaatagaatgtatgattaaagggtgttcatgtaacattttcctaaaaa 18066824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 42699314 - 42699259
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    ||||||||  ||||||||||  |||||||||||||| |||||||||||||||||||    
T  42699314 taatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 42699259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 2547057 - 2546996
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||| ||||||||||   |||||| ||||||  ||||||||||||||||||||    
T  2547057 tccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 2546996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 16603669 - 16603726
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||| ||||||||||| ||||||||||| || |||| ||||| |||||||||||||||    
T  16603669 taatgcatggggtgtataataaggtgtatgattaaagggtgtgcatgtaacattttcc 16603726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 28977182 - 28977145
Alignment:
Q  26 aggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  28977182 aggtgtaggaataaagggtgttcatgtaacattttcca 28977145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 31384723 - 31384672
Alignment:
Q  3 cctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaa 54  Q
    |||||||||||||||||||||||   |||| ||||||| |||||||||||||    
T  31384723 cctaatacatggggtgtacaatagaatgtaagaataaagggtgttcatgtaa 31384672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 33630032 - 33630091
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    |||||||| ||| ||||||||||| ||||||| || |||| ||||||| |||||||||||    
T  33630032 tccctaatgcatagggtgtacaatgaggtgtatgattaaagggtgttcgtgtaacatttt 33630091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 746 - 685
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||    
T  746 tccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 4764769 - 4764826
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  4764769 taatacatggggtgtacaatagggtgtaggaataaatggtgttgatgtaacattttcc 4764826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 30838693 - 30838632
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||    
T  30838693 tccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttcc 30838632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 1750475 - 1750413
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    |||||||||||| |||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  1750475 tccctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcca 1750413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 12415499 - 12415561
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    |||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||||    
T  12415499 tccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcca 12415561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 12427559 - 12427621
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    |||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||||    
T  12427559 tccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcca 12427621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 16096808 - 16096746
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    |||||||||||||||||||| |||  |||||||||||||| ||||||||||||||||||||||    
T  16096808 tccctaatacatggggtgtataatggggtgtaggaataaagggtgttcatgtaacattttcca 16096746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 43335802 - 43335863
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||||| |||||||| ||||||||||||||||| ||||||| |||||||||||    
T  43335802 tccctaatacatgggatgtacaatgaggtgtaggaataaatgatgttcatataacattttcc 43335863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 12302292 - 12302353
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||| |||||||||||  ||||||| |||||| |||||||||||||||||||||    
T  12302292 tccctaatacatagggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 12302353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 43114618 - 43114557
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||| |||||||||||||||| |||||| || |||| |||||||||||||||||||||    
T  43114618 tccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 43114557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33229363 - 33229303
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaat-aaatggtgttcatgtaacatttt 60  Q
    |||||||||||||||||||||||| |||||||||||| ||| |||||||||||| ||||||    
T  33229363 tccctaatacatggggtgtacaatgaggtgtaggaataaaagggtgttcatgtatcatttt 33229303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 11825693 - 11825752
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    |||||||| |||||||||||||||| |||||| || |||| |||||||||||||||||||    
T  11825693 tccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 11825752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 41282013 - 41282072
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    |||||||| |||||||||||||||| |||||| || |||| |||||||||||||||||||    
T  41282013 tccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 41282072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 19047218 - 19047152
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaa 67  Q
    |||||||||||| |||||||||||    |||||||||||| |||||||||||||||||||| |||||    
T  19047218 tccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttctaaaaa 19047152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 966877 - 966934
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||| |||||||||||||||| |||||| || |||| |||||||||||||||||||||    
T  966877 taatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 966934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 16804029 - 16803968
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||| |||||| ||||||||| |||||| || |||| |||||||||||||||||||||    
T  16804029 tccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 16803968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 16843311 - 16843250
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||| |||||| ||||||||| |||||| || |||| |||||||||||||||||||||    
T  16843311 tccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 16843250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 34895780 - 34895841
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||| |||||||||||||||| |||||  || |||||||||||||||||||| |||||    
T  34895780 tccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacactttcc 34895841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 34817824 - 34817875
Alignment:
Q  10 catggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttc 61  Q
    ||||||||||||||| ||||||  ||||||| ||||||||||||||||||||    
T  34817824 catggggtgtacaatgaggtgtgtgaataaagggtgttcatgtaacattttc 34817875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 43490440 - 43490499
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    |||||||||||| | |||||||||  | |||||||||||| |||||||||||||||||||    
T  43490440 tccctaatacatagagtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 43490499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 18491762 - 18491705
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||| |||| ||||||||||| |||||| || |||| |||||||||||||||||||||    
T  18491762 taatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 18491705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 42849911 - 42849947
Alignment:
Q  27 ggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    |||||||||||||| ||||||||||||||||||||||    
T  42849911 ggtgtaggaataaagggtgttcatgtaacattttcca 42849947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 6518508 - 6518566
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    |||||||| ||||||||||||||||  ||||| || |||| |||||||||||||||||||    
T  6518508 tccctaatgcatggggtgtacaatagagtgtatgattaaa-ggtgttcatgtaacatttt 6518566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 13780774 - 13780836
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    ||||||||  |||||||||||||| ||||||  |||||||  ||||| |||||||||||||||    
T  13780774 tccctaatgtatggggtgtacaatgaggtgtgtgaataaaatgtgttgatgtaacattttcca 13780836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 44416973 - 44417037
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaa 65  Q
    ||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| ||||    
T  44416973 tccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttttcaaa 44417037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 43343663 - 43343722
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    ||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||    
T  43343663 tccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttt 43343722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 35069782 - 35069721
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||| |||||||||| |||||||||||||||  ||||||||||||||||||||    
T  35069782 tccctaatacatgaggtgtacaatgaggtgtaggaataaagagtgttcatgtaacattttcc 35069721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 42538470 - 42538535
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaa 66  Q
    |||||||||||| |||||||||||  | |||||||||||| |||||||||||||||||||||||||    
T  42538470 tccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttccaaaa 42538535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 5194278 - 5194337
Alignment:
Q  9 acatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaaa 68  Q
    |||| ||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||    
T  5194278 acatagggtgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcctaaaaa 5194337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 5810963 - 5811030
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaaa 68  Q
    ||||||||| || |||||||||||  |||||||||||||| |||| ||||||||||||||||||||||    
T  5810963 tccctaatatatagggtgtacaatggggtgtaggaataaagggtggtcatgtaacattttccaaaaaa 5811030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 24001051 - 24001113
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    |||||||||||| |||||||||||  | |||||||||||| ||||||||||||||||||||||    
T  24001051 tccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcca 24001113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 39998469 - 39998406
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaa 64  Q
    ||||||||||||||||||||||||| | |||| || ||||  ||||||||||||||||||||||    
T  39998469 tccctaatacatggggtgtacaataggatgtatgattaaaatgtgttcatgtaacattttccaa 39998406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 10573808 - 10573751
Alignment:
Q  3 cctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    ||||||||||||||||||||||| | |||| ||||||| |||||| ||||||||||||    
T  10573808 cctaatacatggggtgtacaataggatgtatgaataaagggtgtttatgtaacatttt 10573751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 40236980 - 40236919
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||| |||||||||||||||| | |||| || |||| |||||||||||||||||||||    
T  40236980 tccctaatgcatggggtgtacaataggatgtatgattaaagggtgttcatgtaacattttcc 40236919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 43317488 - 43317443
Alignment:
Q  17 tgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||    
T  43317488 tgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcc 43317443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 16180400 - 16180454
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    |||||| |||||||||||||  ||||||||||||||||||||| ||||||||||||    
T  16180400 taatacgtggggtgtacaatg-ggtgtaggaataaatggtgttgatgtaacatttt 16180454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 26898441 - 26898499
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattt 59  Q
    ||||||||||||||  ||||||||  |||||| ||||||| ||||||||||||||||||    
T  26898441 tccctaatacatggaatgtacaattgggtgtatgaataaaaggtgttcatgtaacattt 26898499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5015456 - 5015395
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||| ||||||||||   |||||| ||||||  ||||||||||||||||||||    
T  5015456 tccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 5015395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 41861731 - 41861674
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||| ||||||| |||  |||||| ||||||| |||||||||||||||||||||    
T  41861731 taatacatagggtgtataattgggtgtatgaataaagggtgttcatgtaacattttcc 41861674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 42972913 - 42972852
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||||||| ||||||||||   ||||||||||||| | |||||| ||||||||||||    
T  42972913 tccctaatacatgaggtgtacaatggagtgtaggaataaaggatgttcaggtaacattttcc 42972852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 9216350 - 9216302
Alignment:
Q  14 gggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||| | | |||||||||| |||||||||||||||||||||    
T  9216350 gggtgtacaataggatataggaataaagggtgttcatgtaacattttcc 9216302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 31513344 - 31513284
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaa 65  Q
    |||| |||||||| ||||||| |||||| || ||||  |||||||||||||||||||||||    
T  31513344 taatgcatggggtatacaatagggtgtatgattaaagagtgttcatgtaacattttccaaa 31513284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 32029856 - 32029908
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgta 53  Q
    ||||||||||||||||||||||||  ||||||||||||||  ||||| |||||    
T  32029856 tccctaatacatggggtgtacaatggggtgtaggaataaaaagtgtttatgta 32029908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 4638242 - 4638297
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    ||||| ||||||||||||||   ||||| ||||||| |||||||||||||||||||    
T  4638242 taatatatggggtgtacaattgagtgtatgaataaaaggtgttcatgtaacatttt 4638297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 45326081 - 45326019
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcca 63  Q
    ||||||||| ||||||||||||||  | |||| ||||||| |||||| |||||||| ||||||    
T  45326081 tccctaatatatggggtgtacaatgtgatgtatgaataaaaggtgtttatgtaacactttcca 45326019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 27535278 - 27535331
Alignment:
Q  9 acatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||| ||||||||||  ||||| || |||| |||||||||||||||||||||    
T  27535278 acatggagtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcc 27535331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 38160661 - 38160694
Alignment:
Q  29 tgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||| |||||||||||||||||||||    
T  38160661 tgtaggaataaagggtgttcatgtaacattttcc 38160694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 24280644 - 24280696
Alignment:
Q  10 catggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||| |||| |||| |||||| ||||||| |||||||| ||||||||||||    
T  24280644 catgggatgtagaatagggtgtatgaataaagggtgttcacgtaacattttcc 24280696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 31408676 - 31408732
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttc 61  Q
    |||| |||||| |||||||||  ||||| || |||| ||||||||||||||||||||    
T  31408676 taatgcatgggatgtacaatagagtgtatgattaaagggtgttcatgtaacattttc 31408732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 35495 - 35559
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaa 65  Q
    |||||||| |||||||||||||||| |||||| || ||||||||||| |||||||||||||||||    
T  35495 tccctaatgcatggggtgtacaatatggtgtatgattaaatggtgtttatgtaacattttccaaa 35559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 112716 - 112650
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaaaa 67  Q
    |||||||||||| |||||||||||    |||||||||||| |||||||||||||||||||| |||||    
T  112716 tccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttctaaaaa 112650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 14227 - 14288
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||| || ||||||||  ||||||| |||||| |||||||||||||||||||||    
T  14227 tccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 14288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 24555 - 24616
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    |||||||||||| || ||||||||  ||||||| |||||| |||||||||||||||||||||    
T  24555 tccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 24616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 23463 - 23524
Alignment:
Q  4 ctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttccaaa 65  Q
    |||||||||||| ||||||||   ||||||||||||| ||||||||| ||||||||||||||    
T  23463 ctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacattttccaaa 23524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 11312 - 11251
Alignment:
Q  1 tccctaatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacattttcc 62  Q
    ||||||||| ||||||||||||||  |||||| |||||||  |||||||||| |||||||||    
T  11312 tccctaatatatggggtgtacaatggggtgtatgaataaagtgtgttcatgtgacattttcc 11251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 45762 - 45817
Alignment:
Q  5 taatacatggggtgtacaataaggtgtaggaataaatggtgttcatgtaacatttt 60  Q
    |||||||| || ||||||||| |||||| || |||| |||||||||||||||||||    
T  45762 taatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 45817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University