View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1050_high_4 (Length: 270)
Name: NF1050_high_4
Description: NF1050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1050_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 47 - 242
Target Start/End: Complemental strand, 5451635 - 5451438
Alignment:
| Q |
47 |
caccaagttcatactccattggtccatattcattttcaatctgtgcataaacaatggtaccaaaaggcaatacattca--atatatctccattttttctt |
144 |
Q |
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| T |
5451635 |
caccaagttcatactccattggtccatattcattttcaatctgtgcataaacaatggtaccaaaaggcaatatattcattatatatctccattttttctt |
5451536 |
T |
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| Q |
145 |
caactagtaaagtaactagattaacattgttatttaataccgccaagaaaatacaaagaaagtaacaagattaacatctttacctgagatagaattat |
242 |
Q |
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| T |
5451535 |
caactagtaaagtaactagattaacattgttatttaataccgccaagaaaatacaaagaaagtaacaagattaacatctttacctgagatagaattat |
5451438 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 42989400 - 42989441
Alignment:
| Q |
47 |
caccaagttcatactccattggtccatattcattttcaatct |
88 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||| |
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| T |
42989400 |
caccaatttcatactccataggtccatattcattttcaatct |
42989441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 1617269 - 1617310
Alignment:
| Q |
47 |
caccaagttcatactccattggtccatattcattttcaatct |
88 |
Q |
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|||||| |||||||||| |||||||| ||||||||||||||| |
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| T |
1617269 |
caccaatttcatactccgttggtccacattcattttcaatct |
1617310 |
T |
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