View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1050_low_1 (Length: 610)
Name: NF1050_low_1
Description: NF1050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1050_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 216 - 582
Target Start/End: Complemental strand, 53675128 - 53674762
Alignment:
| Q |
216 |
gtttacgtgatttgcattccttctgattagtccgcaaaaaacgacattgaatagggatggattctagagacatggaggggaccaaattttagtaagtact |
315 |
Q |
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| T |
53675128 |
gtttacgtgatttgcattccttctgattagtctgcaaaaaacgacattcgatagggatggattctagagacatggagtggaccaaattttagtaagtact |
53675029 |
T |
|
| Q |
316 |
aagatgaagagtattttagagggaatcaaaaatatagttgaccctgtctgtcatataatggttagactttaatatggtttgctattagagtcgaagaatg |
415 |
Q |
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| T |
53675028 |
aagatgaagagtattttagagggaataaaaaatatagttgaccctgtctgtcatataatggttagactttaatatggtttgctattagagtcgaagaatg |
53674929 |
T |
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| Q |
416 |
ctgatgaaaacatcattatcaggttaatttggaggcaaaagtggcattgagttccacagtaggtggtggtttagtggaggaagccaagtcaatttctgct |
515 |
Q |
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| T |
53674928 |
ctgatgaaaacatcattatcaggttaatttggaggcaaaagtggcattgagttccacagtaggtggtggtttagtggaggaagccaagtcaatttctgct |
53674829 |
T |
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| Q |
516 |
gattttcttcttcttcttggcggaacaagaaacaaaacgaataagtaagaactcatcagtgtaacat |
582 |
Q |
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| T |
53674828 |
gattttcttcttcttcttggcggaacaagaaacaaaacaattaagtaagaactcatcagtgtaacat |
53674762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 6 - 215
Target Start/End: Complemental strand, 53675387 - 53675181
Alignment:
| Q |
6 |
agtgagatgaagacaatcacaacttaggcaagcaaaagcatatgttatatctgtgcttggagaatttgcacagacttgttgttggtccaaacaggtaatt |
105 |
Q |
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| T |
53675387 |
agtgagaagaagacaatcacaacttaggcaagcaaaagcatatgttatatctgtgcttggagaatttgcacagacttgttg---gtccaaacaggtaatt |
53675291 |
T |
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| Q |
106 |
aatttcaaacacacgtgaatcaaatcatacaagtatatatgtgtctccatcatcaataaaattgaggaaaaaataatgttttgttattggatagggggaa |
205 |
Q |
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| T |
53675290 |
aatttcaaacacacgtgaatcaaatcatacaagtatatatgtgtctccatcatcaataaaattggggaaaaaataatgttttgttattggatagggggaa |
53675191 |
T |
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| Q |
206 |
tgcaacacat |
215 |
Q |
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| T |
53675190 |
tgcaacacat |
53675181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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