View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1050_low_3 (Length: 455)
Name: NF1050_low_3
Description: NF1050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1050_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 90 - 443
Target Start/End: Original strand, 9970604 - 9970958
Alignment:
| Q |
90 |
aaaaccaaggcccaatacaagtagtttaagaaaaattagtctaaactacaagaaattcgttaatttctattcaacttcaagcccagcccagttttcacta |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9970604 |
aaaaccaaggcccaatacaagtagtttaagaaaaattagtctaaactacaagaaattcgttaatttctattcaacttcaagcccagcccagttttcacaa |
9970703 |
T |
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| Q |
190 |
taatagaagccaaattagtctaaacctgcaaatacgactaataaataattctgttagctttcaaacacatcacgtaactcttcaatcggatattcagaca |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9970704 |
taatagaagccaaattagtctaaacctgcaaatacgactaataaataattctgttagctttcaaacacatcacgtaactcttcaatcggatattcagaca |
9970803 |
T |
|
| Q |
290 |
tggttaaaataattaagaaaagtcatcgctcataagtcatttagtgcttattcattctttgttccattagggcctactgggcctcctaggtctccatcag |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9970804 |
tggttaaaataattaagaaaagtcatcgctcataagtcatttagtgcttattcattctttgttccattagggcctactgggcctcctaggtctccatcag |
9970903 |
T |
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| Q |
390 |
ttaggcatcaata-ttttttcgtagttgcatctgtctcagctgcaatttggtctc |
443 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9970904 |
ttaggcatcaatatttttttcgtagttgcatctgtctcagctgcaatttggtctc |
9970958 |
T |
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