View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10510_5 (Length: 422)
Name: NF10510_5
Description: NF10510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10510_5 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 240 - 402
Target Start/End: Original strand, 1247404 - 1247566
Alignment:
| Q |
240 |
tttcattcttcttcaccattttcactctcaaacaaacaatgatgggtaacaacaacagagacagagaagaacccttaacattcacaatgccatcatcttc |
339 |
Q |
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| T |
1247404 |
tttcattcttcttcgccattttcactctcaaacaaacaatgatgggtaacaacaacagagaaagagaagaacccttaacattcacaatcccatcatcttc |
1247503 |
T |
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| Q |
340 |
ctctcattcctcaccaatcaccgtctctgacacactcgatagttacctcaccgatccaagaag |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
1247504 |
ctctcattcctcaccaatcaccgtctctgacacactcgatagttacctcactgacccaagaag |
1247566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 1246238 - 1246380
Alignment:
| Q |
1 |
gagagacattgcttgaagcaatttctactggcagaacaagaaattatcaaattaaaaatatatttcacattaagaaaatcaagataaagataatttgata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1246238 |
gagagacattgcttgaagcaatttctactggcagaacaagaaattatcaaattaaaaatatatttcacattaagaaaatcaagagaaagataatttgata |
1246337 |
T |
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| Q |
101 |
atttaatgtaaagatactattcttcaagtgaggttattaaaca |
143 |
Q |
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| T |
1246338 |
atttaatgtaaagatactattcttcaagtgaggttattaaaca |
1246380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 42010899 - 42011041
Alignment:
| Q |
1 |
gagagacattgcttgaagcaatttctactggcagaacaagaaattatcaaattaaaaatatatttcacattaagaaaatcaagataaagataatttgata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42010899 |
gagagacattgcttgaagcaatttctactggcagaacaagaaattatcaaattaaaaatatatttcacattaagaaaatcaagagaaagataatttgata |
42010998 |
T |
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| Q |
101 |
atttaatgtaaagatactattcttcaagtgaggttattaaaca |
143 |
Q |
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| T |
42010999 |
atttaatgtaaagatactattcttcaagtgaggttattaaaca |
42011041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 240 - 402
Target Start/End: Original strand, 42014176 - 42014338
Alignment:
| Q |
240 |
tttcattcttcttcaccattttcactctcaaacaaacaatgatgggtaacaacaacagagacagagaagaacccttaacattcacaatgccatcatcttc |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||||| |
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| T |
42014176 |
tttcattcttcttcaccattttcactctcaaacaaacaatgatgggtaacaacaacagagaaagagaagaatctttaacattcacaatcccatcatcttc |
42014275 |
T |
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| Q |
340 |
ctctcattcctcaccaatcaccgtctctgacacactcgatagttacctcaccgatccaagaag |
402 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42014276 |
ctctcattcctcaccgatcaccgtctctgacacactcgatagttacctcaccgacccaagaag |
42014338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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