View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10510_low_2 (Length: 296)
Name: NF10510_low_2
Description: NF10510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10510_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 39 - 281
Target Start/End: Original strand, 24723569 - 24723817
Alignment:
| Q |
39 |
tctaatcacaatccatggggttgaaaccttatctagcattagttatatataattggtcgaaacctttctaaaaatggggttgattgagtggagggagagg |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24723569 |
tctaatcacaatccatggggttgaaaccttatctagcattagttatatataattggtcgaaacctttctaaaaatgggattgattgagtggagggagagg |
24723668 |
T |
|
| Q |
139 |
tttaagccttatcgtgtgt------tcatagattaattcatggtcaaaagtcattatctagattaatcttctttgtttcctcgtaaagctttaatgaatc |
232 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24723669 |
tttaagccttatcgtgtgtgaccactcatagattaattcatggtcaaaattcattatctagattaatcttctttgtttcctcgtaaagctttaatgaatc |
24723768 |
T |
|
| Q |
233 |
aaatctggcaactgaaaatgtgatgatctttgatggtgtgcgttgagag |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24723769 |
aaatctggcaactgaaaatgtgatgatctttgatggtgtgcgttgagag |
24723817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 39 - 281
Target Start/End: Original strand, 21131432 - 21131680
Alignment:
| Q |
39 |
tctaatcacaatccatggggttgaaaccttatctagcattagttatatataattggtcgaaacctttctaaaaatggggttgattgagtggagggagagg |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||| |
|
|
| T |
21131432 |
tctaatcacaatccatggggttgaaaccttatctagcattagttatatataattggtcgaaacctttctcaaaatgggcttgatagagtggagggagagg |
21131531 |
T |
|
| Q |
139 |
tttaagccttatcgtgtgt------tcatagattaattcatggtcaaaagtcattatctagattaatcttctttgtttcctcgtaaagctttaatgaatc |
232 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| ||||||| ||| |
|
|
| T |
21131532 |
tttaagccttatcgtgtgtgaccactcatagattaattcatggtcaaaattcattatctagattaatctttttcgtttcctcgtaaatttttaatgtatc |
21131631 |
T |
|
| Q |
233 |
aaatctggcaactgaaaatgtgatgatctttgatggtgtgcgttgagag |
281 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21131632 |
aaatctggcaactggaaatgtgatgatctttgatggtgtgcgttgagag |
21131680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 24723059 - 24723099
Alignment:
| Q |
64 |
accttatctagcattagttatatataattggtcgaaacctt |
104 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24723059 |
accttatctagcattagttatatagaattggtcgaaacctt |
24723099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 87 - 246
Target Start/End: Original strand, 49580469 - 49580630
Alignment:
| Q |
87 |
ataattggtcgaaacctttctaaaaatggggttgattgagtggagggagaggtttaagccttatcgtgtgt------tcatagattaattcatggtcaaa |
180 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
49580469 |
ataattggtcaaaacctttttaaaaatggggttgattgagtggag----aggtttaagccttatcgtgtgtgaccactcatagattaattcatggtcaaa |
49580564 |
T |
|
| Q |
181 |
agtcattatctagattaatcttctttgtttcctcgtaaagctttaatgaatcaaatctggcaactg |
246 |
Q |
| |
|
| ||||||||| || |||| || | |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49580565 |
attcattatcttgagtaatatttctgttttcctcgtaaagctttaatgaatcaaatccggcaactg |
49580630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University