View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10511_high_12 (Length: 261)
Name: NF10511_high_12
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10511_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 28466483 - 28466557
Alignment:
| Q |
179 |
gcttcatcaagcagtgatggggaaaggactattataaggaaagaaaaagatgaatggaagatcaatttctctgct |
253 |
Q |
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| T |
28466483 |
gcttcatcaagcagtgatggggaaaggactattataaggaaagaaaaagatgaatggaagatcaatttctctgct |
28466557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 28466314 - 28466381
Alignment:
| Q |
19 |
ggtttcagaaaccaggttggtttcatcatcacatgctcatgaaatattaatatcatcattaaccaatg |
86 |
Q |
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| T |
28466314 |
ggtttcagaaaccaggttggttttatcatcacatgctcatgaaatattaatatcatcattaaccaatg |
28466381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 28474904 - 28474978
Alignment:
| Q |
179 |
gcttcatcaagcagtgatggggaaaggactattataaggaaagaaaaagatgaatggaagatcaatttctctgct |
253 |
Q |
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|||||||||| |||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28474904 |
gcttcatcaaacagtgatgaggagaggactgttataaggaaagaaaaagatgaatggaagatcaatttctctgct |
28474978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 28474732 - 28474787
Alignment:
| Q |
19 |
ggtttcagaaaccaggttggtttcatcatcacatgctcatgaaatattaatatcat |
74 |
Q |
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|||| |||||||||||||||||| ||||| ||||| ||||||||||||||||||| |
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| T |
28474732 |
ggttacagaaaccaggttggtttattcatcccatgcacatgaaatattaatatcat |
28474787 |
T |
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