View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10511_high_20 (Length: 220)
Name: NF10511_high_20
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10511_high_20 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 50739336 - 50739555
Alignment:
| Q |
1 |
tatcggtttatctagtaatatattggcatatggtagctaaagcattaattctatcgacggtaggagcaatatttaaggctttatgctcatatcaagcata |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50739336 |
tatcggtttatctagtaatatgttggcatatggtagctaaagcattaattctatcgacggtaggagcaatatttaaagctttatgctcatatcaagcata |
50739435 |
T |
|
| Q |
101 |
gaggataactaagttactccccacaaatcaatagaaacgcatttttgtctgaactctcaagtaaaagagtatatcattattacctgctaacattaaacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50739436 |
gaggataactaagttactccccacaaatcaatagaaacgcatttttgtctgaactctcaagtaaaagagtatatcattattacctgctaacattaaacca |
50739535 |
T |
|
| Q |
201 |
tttttgtccacagcccgata |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
50739536 |
tttttgtccacagcccgata |
50739555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 3418142 - 3418360
Alignment:
| Q |
5 |
ggtttatctagtaatatattggcatatggtagctaaagcattaattctatcgacggtaggagcaatatttaaggctttatgctcatatcaagcatagagg |
104 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||| |||||||||||||| || ||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
3418142 |
ggtttatctagtaatatgttggcatatggttgctaaagctttaattctatcgacattaagagcaatatttaaagctttatgctcatatcaagcatagaag |
3418241 |
T |
|
| Q |
105 |
ataactaagttactccccacaaatcaatagaaacgca--tttttgtctgaactctcaagtaaaagagtatatcattattacctgctaacatt-aaaccat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||| |||||| |||||||||||||||||||| ||||||||||||||||||| ||||| | |
|
|
| T |
3418242 |
ataactaagttactccccacaaatcaatagaaacacatttttttttctgaaatctcaagtaaaagagtatataattattacctgctaacattaaaaccgt |
3418341 |
T |
|
| Q |
202 |
ttttgtccacagcccgata |
220 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
3418342 |
ttttgtccacaacccgata |
3418360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University