View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10511_high_6 (Length: 352)
Name: NF10511_high_6
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10511_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 337
Target Start/End: Complemental strand, 7624475 - 7624149
Alignment:
| Q |
11 |
cagagaaacgtttcctctataaataccaagcatgttgaggcttagctcaatgtgacaacaatacaacgtcaagtagttaatttgtttttccctattcaaa |
110 |
Q |
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| T |
7624475 |
cagagaaacgtttcctctataaataccaagcatgttgaggcttagctcaatgtgacaacaatacaacgtcaagtagttaatttgtttttccctattcaaa |
7624376 |
T |
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| Q |
111 |
tagattgctgttgttatacgtacaaaacttatttatatccttaatccttaatcatcatcacatatatttcatatttcataaccatagccacatacataac |
210 |
Q |
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| T |
7624375 |
tagattgctgttgttatacgtacaaaacttatttatatccttaatccttaatcatcatcacatatatttcatatttcataaccatagccacatacataac |
7624276 |
T |
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| Q |
211 |
ataaattaaccatgtctctatggttcattgcattagctagtttcacattatgcatcctcatataccgttttatgaaatttgcaaaaagatcttcatcact |
310 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7624275 |
ataaattaaccatgtctctatggttcattgcaatagctagtttcacattatgcatcctcatataccgttttatgaaatttgcaaaaagatcttcatcact |
7624176 |
T |
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| Q |
311 |
accacttccacctggaccaaaaccatg |
337 |
Q |
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| T |
7624175 |
accacttccacctggaccaaaaccatg |
7624149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 216 - 337
Target Start/End: Original strand, 7659415 - 7659536
Alignment:
| Q |
216 |
ttaaccatgtctctatggttcattgcattagctagtttcacattatgcatcctcatataccgttttatgaaatttgcaaaaagatcttcatcactaccac |
315 |
Q |
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| T |
7659415 |
ttaaccatgtctctatggttcattgcattagctagtttcacattatgcatcctcatataccgttttatgaaatttgcaaaaagatcttcatcactaccac |
7659514 |
T |
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| Q |
316 |
ttccacctggaccaaaaccatg |
337 |
Q |
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| T |
7659515 |
ttccacctggaccaaaaccatg |
7659536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 221 - 337
Target Start/End: Original strand, 7675047 - 7675163
Alignment:
| Q |
221 |
catgtctctatggttcattgcattagctagtttcacattatgcatcctcatataccgttttatgaaatttgcaaaaagatcttcatcactaccacttcca |
320 |
Q |
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||||||||||||| |||||||||| |||||| || ||||| ||| | ||||||||||| |||| ||||||| |||| |||||||||||||||| ||| |
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| T |
7675047 |
catgtctctatggctcattgcattctctagttgcatattatcaatcttaatataccgtttggtgaagtttgcaacaagaacttcatcactaccactccca |
7675146 |
T |
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| Q |
321 |
cctggaccaaaaccatg |
337 |
Q |
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| T |
7675147 |
cctggaccaaaaccatg |
7675163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 7659294 - 7659350
Alignment:
| Q |
14 |
agaaacgtttcctctataaataccaagcatgttgaggcttagctcaatgtgacaacaa |
71 |
Q |
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| T |
7659294 |
agaaacgattcct-tataaataccaagcatattgaggcatagcttaatgagacaacaa |
7659350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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