View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10511_low_1 (Length: 615)
Name: NF10511_low_1
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10511_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 19 - 607
Target Start/End: Complemental strand, 42342978 - 42342390
Alignment:
| Q |
19 |
atagctggtactatattgtaactttaaacaaaaataatccacacacatagcaaggtaacttcaaacattaactactatataatgtacaaattagagtagc |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342978 |
atagctggtactatattgtaactctaaacaaaaataatccacacacatagcaaggtaacttcaaacattaactactatataatgtacaaattagagtagc |
42342879 |
T |
|
| Q |
119 |
tagttatatcatttgaaaagagtcatccatatttgatgattcaatccttgcaaacagtggaaaaatttgctctcgaacaaaatccacaccaccattccnn |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42342878 |
tagttatatcatttgaaaagagtcatccatatttgatgattcaatccttgcaaacagtggaaaaatttgctctccaacaaaatccacaccaccattcctt |
42342779 |
T |
|
| Q |
219 |
nnnnnnnnnnnnnnnnnnnnnngactggttttgactttagtatattcttcttggttcttgatctgcatcatgtgcacttttctcagttttaactacacaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342778 |
tgtttttttttcctttctttttgactggttttgactttagtatattcttcttggttcttgatctgcatcatgtgcacttttctcagttttaactacacaa |
42342679 |
T |
|
| Q |
319 |
gaagatgcacttatgcatcaaggatttcactctttaccatgtgatgttttcttcacagatgacaacttgtattccttcttaagcctctcagtttctcttt |
418 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342678 |
gaagatgcacttatgcatcaaggatttcactctctaccatgtgatgttttcttcacagatgacaacttgtattccttcttaagcctctcagtttctcttt |
42342579 |
T |
|
| Q |
419 |
tgctttctgagctttcgtttgaactctcacgtttgtttcctctaaacactgcatgagataatcataagacagtaatttagatttgatttcaatccatttg |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342578 |
tgctttctgagctttcgtttgaactctcacgtttgtttcctctgaacactgcatgagataatcataagacagtaatttagatttgatttcaatccatttg |
42342479 |
T |
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| Q |
519 |
attcaaaataaaaggagttttaatgtctctaaattttctatggctaattatagtttagaccatcattggttacctgttgtcttcttctc |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342478 |
attcaaaataaaaggagttttaatgtctctaaattttctatggctaattatagtttagaccatcattggttacctgttgtcttcttctc |
42342390 |
T |
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