View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10511_low_10 (Length: 410)
Name: NF10511_low_10
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10511_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 100 - 399
Target Start/End: Original strand, 45520713 - 45521012
Alignment:
| Q |
100 |
tcaccaacttttatgggtataaataattgttttcatttccgtaaatcccaaatttgcccctcaccaacaacaattgcggagccgtaatcctttgctatta |
199 |
Q |
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| T |
45520713 |
tcaccaacttttatgggtataaataattgtttttatttccgtaaatcccaaatttgcccctcaccaacaacaattgcggagccgtaatcctttgctatta |
45520812 |
T |
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| Q |
200 |
tatata--aataaacattattaattaaaactctaaagcaagcaagcaagcaagcattggttatttacttgttctgttgt--tgtgtcggggtttccaata |
295 |
Q |
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| T |
45520813 |
tatatataaataaacattattaattaaaactctaaagcaagcaagcaagca----ttggttgtttactagttgtgttgtgttgtgtaggggtttccaata |
45520908 |
T |
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| Q |
296 |
tttgaacaagttagaagaagattagatacaatttcacatcttcttcttcttcattgatcattcaattaaatggcatcatctaaacaagaaacaaaggaaa |
395 |
Q |
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| T |
45520909 |
tttgaacaagttagaagaagattagatacaatttcacatcttcttcttcttcattgatcattcaattaaatggcatcatctaaacaagaaacaaaggaaa |
45521008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 45520602 - 45520679
Alignment:
| Q |
9 |
gaaaagaaaagcatcatggatcgggtgggtttagaaggaacccaaacccgacctcataaattt---ggatttgatctcattgac |
89 |
Q |
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| T |
45520602 |
gaaaagaaaagcatcatggatcgggtgggtttagaggg------aacccgacctaataaatttggaggatttgatctcattgac |
45520679 |
T |
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