View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10511_low_11 (Length: 385)
Name: NF10511_low_11
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10511_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 22 - 381
Target Start/End: Original strand, 5848493 - 5848852
Alignment:
| Q |
22 |
gatccacgcaagttggactcggacatcattgttgatagtgtcaagatctgattaaacgaaaccaatcattaacactgtcaatgcaggtaggacatgtcca |
121 |
Q |
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| T |
5848493 |
gatccacgcaagttggactcggacatcattgttgatagtgtcaagatctgattaaacgaaaccaatcattaacaatgtcaatgcaggtaggacatgtccg |
5848592 |
T |
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| Q |
122 |
aaaaaggttcaactatacaataccttcgaggcgtagttttgccggaagggtttggtatagtctttgagatggctggaaatggtagtaattttgtgcggaa |
221 |
Q |
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| T |
5848593 |
gaaaaggttcaactatacaataccttcgaggcgtagttttgccggaagggtttggtatagtctttgagatggctggaaatgggagtaattttgtgcggaa |
5848692 |
T |
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| Q |
222 |
atgtaatcaccattcaccctccttgattacttttcttcatcctctcctatcaagaaacattggaaatcgctaactctaatttgacatgcatgcaacggtt |
321 |
Q |
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| T |
5848693 |
atgtaatcaccattcaccctccttgattacttttcttcatcctctcctatcaagaaacattggaaatcgctaactctgatttgacatgcatgcaacagtt |
5848792 |
T |
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| Q |
322 |
tgaaacttttggaaagctagaaaactgtcttataattattttaattttcggcattttcac |
381 |
Q |
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| T |
5848793 |
tgaaaaatttggaaagctagaaaactttcttaaaatttttctaattttcggcattttcac |
5848852 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 12332453 - 12332518
Alignment:
| Q |
237 |
accctccttgattacttttcttcatcctctcctatcaagaaacattggaaatcgctaactctaatt |
302 |
Q |
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| T |
12332453 |
accctccttgactacttctcttcctcttctctaagcaagaaacattggaaacggctaactctaatt |
12332518 |
T |
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