View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10511_low_12 (Length: 376)
Name: NF10511_low_12
Description: NF10511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10511_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 45121794 - 45121999
Alignment:
| Q |
21 |
cttagccatcaaaggctatgtgaactgggcggcttcggttcttgattcttctttatggtatgagaagtagttatgtaatttaattcaattgttcttgaaa |
120 |
Q |
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| T |
45121794 |
cttagccatcaaaggctatgtgaactgggcggcttcggttcttgattcttctttatggtatgagaagcagttatgtaatttaattcaattgttcttgaaa |
45121893 |
T |
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| Q |
121 |
tatgtcgggtttattatcttttatattttaatacgtttaattacaatgtcatataacatgcaatgtatataagaatgatcaagggtaaaaaatgttgggc |
220 |
Q |
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| T |
45121894 |
tatgtcgggtttattatcttttatattttaatacgtttaattacaatgtcatataacatgcaatgtatataagaatgatcaagggtaaaaaatgttgggc |
45121993 |
T |
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| Q |
221 |
ttataa |
226 |
Q |
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|||||| |
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| T |
45121994 |
ttataa |
45121999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 264 - 368
Target Start/End: Original strand, 45122166 - 45122270
Alignment:
| Q |
264 |
atacatattttttactcggtaataaaatctctacactaacattctttttgagcaatattcaagtgcccgagtgttgatattataaatcaatactaagttc |
363 |
Q |
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| T |
45122166 |
atacatattttttactcagtaataaaatctctacactaacattctttttgagcaatattcaagtggccgagtgttgatattataaatcaatgctaagttc |
45122265 |
T |
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| Q |
364 |
ttctc |
368 |
Q |
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||||| |
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| T |
45122266 |
ttctc |
45122270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 45122028 - 45122085
Alignment:
| Q |
221 |
ttataaaaaatatagtataaatagtttttgcatcagacactgaatacatattttttac |
278 |
Q |
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| T |
45122028 |
ttataaaaaatatagtataaatagtttttgcatcagacactgaatacatattttttac |
45122085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 45122628 - 45122693
Alignment:
| Q |
131 |
ttattatcttttatattttaatacgtttaattacaatgtcatataacatgcaatgtatataagaat |
196 |
Q |
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| T |
45122628 |
ttattatcttttatatttcaatacatttaattgcattgtcatataacatgcgatgtatataagaat |
45122693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 45122692 - 45122750
Alignment:
| Q |
145 |
attttaatacgtttaattacaatgtcatataacatgcaatgtatataagaatgatcaag |
203 |
Q |
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| T |
45122692 |
atttcaatacatttaattgcaatgtcataaaacatgcaaagtatataagaatgatcaag |
45122750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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